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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    REMNet: Online Resources 5.3.19
    Video on online resources for studying microbiomes from the Research Experiences in Microbiomes Network

    Keywords: VideoMicrobiology EducationmicrobiomesMicrobiome researchresearch in the classroomREMNet

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    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office
    YouTube video on using statistical notation in Microsoft Word.

    Keywords: videosonline learninggenomicsyoutubestatistics symbols

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    Visual Datasets
    This downloadable module features imaginary animals and plants, and is meant to aid students in thinking about questions of evolution, classification, and phylogeny.

    Keywords: moduleEvolutionResources @ BioQUESTonlinephylogenyonline learning

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    2015 BEER Minisymposium: QUBES: Online community and resources for quantitative biology education
    Presentations included in a minisymposium at the Eighth International Symposium on BEER, Illinois State University, Normal, IL

    Keywords: QUBESminisymposium

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    Mice, Acorns, and Lyme Disease: a Case Study to Teach the Ecology of Emerging Infectious Diseases.
    Ebola, Zika, the recall of contaminated lettuce - these are just a few recent outbreaks making headlines. Students should be able to connect what they learn in their biology courses to explain...

    Keywords: epidemiologyEcological changeInfectious disease ecologyReservoirsTransmission cycle

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    Looking at Climate change through the geological timescale lens with Dr. Julia Kelson
    We are currently witnessing one of the most dramatic climate change events in Earth’s history. This begs the following question: how has Earth’s climate changed throughout geologic time? Dr. Julia...

    Keywords: climate changegeology

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    The impacts of wildfire smoke on human health with Dr. Colleen Reid
    In this discussion, Dr. Colleen Reid discusses her field of Health Geography, or how environmental exposures impact population health. A detailed breakdown of the pollutant composition of...
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    US Forest Service land management efforts with Kurt Sable
    Kurt Sable has been a Hydrologist for the US Forest Service for 17 years, working for three different National Forests in Northern California. He supplies insight on the watershed restoration...

    Keywords: forest ecologyhydrologywildfirenatural resources

    417

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    Topics in Restoration Ecology: Restoring the Red Wolf in North Carolina
    The planet’s most endangered wolf is the red wolf, with only one wild population, a nonessential experimental group established in eastern North Carolina, of 15-17 individuals in existence as of...

    Keywords: ecologyRestoration Ecology

    685

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    Discrete Modeling and Structures (Course Materials)
    These are the materials for DCS course offered at Bates College. This is a sampler of structures and ways they are used to model biological and social phenomena.

    Keywords: labsagent-based modelingoctavematlabDiscrete Difference Equationsmatrix modelscoursezombiesbiomath courseeconomicsdemonstrationin-class activitylab protocolproblem sethamlet

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    Outstanding Oaks: Quercus Phenology at NEON Sites
    This resource uses an app hosted on QUBES to visualize similarities and differences in Quercus phenology at three NEON sites in California, Florida, and Massachusetts.

    Keywords: ecologyphenology

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    Addressing Complex, Emergent Risks in 21st Century Natural-Human Systems
    Presentation on wicked problems in natural-human systems

    Keywords: climate changeSummer Workshop 2018environmental systemsfinancial risksystem of systems

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    Claymander Field Experiment
    This activity addresses how predation may affect the frequency of two color morphs in a population. Students collect and analyze data from clay salamander models ('claymanders') to determine...

    Keywords: Field researchpredation ecologysalamanderAudience level - Introductory UG - majorsAudience level - Advanced UG

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    A Pandemic Pivot: Podcast as an Active Engagement Tool in the Classroom and Beyond
    Higher education in STEM undoubtedly integrates the use of technology as a primary mode for content delivery to undergraduate students. This became especially salient throughout the shift to online...

    Keywords: VaccinesReplication of virusesCOVID-19 transmission

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    Using Open-Source Bioinformatics and Visualization Tools to Explore the Structure and Function of SARS-CoV-2 Spike Protein
    The relationship between protein structure and function is a foundational concept in undergraduate biochemistry. We find this theme is best presented with assignments that encourage exploration and...

    Keywords: bioinformaticsmolecular modelingCOVID19protein structure and functionUCSF ChimeraSARS-CoV-2 spike proteinACE2 receptor

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    Comparing Primary and Secondary Forest in a Preserve in Plano Texas: A Forest Ecology Course-based Undergraduate Research Experience (CURE) for Non-Majors and Lower-Level Majors
    An activity that can be conducted as an online or field exercise in which students develop and test their hypotheses about how forest stand characteristics differ between two forest types.

    Keywords: forest ecologyecologycourse-based undergraduate research experienceUsing Excel

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    Reaching Across Boundaries: Building Relationships, Sharing, & Learning Online
    Presentation given as part of a Minisymposium at BEER 2015.

    Keywords: social mediaCommunities of Practiceonline learning communities

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    Integrating Community Ecology Into the Study of Parasites: Exploring the Effect of Host Behavior on Parasite Transmission Rates
    Organismal life cycles are often presented as a set of facts to memorize in undergraduate biology courses. This approach is cognitively demanding for students and fails to convey how central life...

    Keywords: statisticsspecies interactionsQuantitative reasoninggraphsCommunity EcologyParasitologyfood webs

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    Online, 10-minute adaptation of Biobyte 1 – Where are we in the data science landscape?
    Adaptation for 10 minute activity in an online meeting to introduce the NAS Data Science For Undergraduates report's definition of data acumen and engage participants in a self assessment of how...
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    Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses
    Our understanding of microbiomes, or the collection of microorganisms and their genes in a given environment, has been revolutionized by technological and computational advances. However, many...

    Keywords: microbiomeDNA SubwayCyVerseCourse based undergraduate researchQIIME2ranacapa

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