You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Breaking It Down: What Factors Control Microbial Decomposition Rates?
    Demonstrating and modeling changes in ecosystem processes in the laboratory classroom can be logistically difficult and expensive. This complexity often leaves little time for students to generate...

    Keywords: data analysishypothesis testingdata visualizationdata managementMicrobial RespirationDecompostionAbiotic ConditionsResults Communication

    555

    views

    35

    downloads

    0

    comments

    0

    adaptations

    SIMIODE Spring 2024 Webinars - WikiModel
    WikiModel is cloud-based application and requires no installation and is run via a web-browser to facilitate rapid implementation. Equations are typed in as they appear in a textbook. ODEs are...

    Keywords: modelingSoftwaretoolapplicationWikiModelmodeling cycle

    128

    views

    56

    downloads

    0

    comments

    0

    adaptations

    A Customizable Inquiry-Based Statistics Teaching Application for Introductory Biology Students
    Building strong quantitative skills prepares undergraduate biology students for successful careers in science and medicine. While math and statistics anxiety can negatively impact student learning...

    Keywords: introductory biologyQuantitative reasoningInclusive teachingauthentic inquiryInferential statisticsInstructional scaffolding

    796

    views

    284

    downloads

    0

    comments

    0

    adaptations

    Writing Microbiology Resource Announcements (MRA)
    This resources provides a framework for students to write a Microbiology Resource Announcement, collaboratively.

    Keywords: phageBioinformatics and GenomicsGenome announcementmanuscriptMRA

    537

    views

    341

    downloads

    0

    comments

    0

    adaptations

    Restoring Tropical Forests: Implementing an online module in an undergraduate biology course in Indonesia
    This resource describes my implementation of a module on tropical forest restoration in Costa Rica for an undergraduate Ecology course at Universitas Gadjah Mada, Indonesia....

    Keywords: RestorationEcosystem Servicesforest restorationtransdisciplinary researchsocial forestryhuman well-beingcommunity-based

    291

    views

    138

    downloads

    0

    comments

    0

    adaptations

    Central Dogma, Dictionaries, and Functions: Using Programming Concepts to Simulate Biological Processes
    Technologies like next-generation sequencing, proteomics, and high-throughput phenotyping have transformed the way we do biology. There is a continued need for scientists with computational skills...

    Keywords: computationpythonJupyter notebookFunctionscentral dogmaDictionaries

    1039

    views

    130

    downloads

    0

    comments

    0

    adaptations

    From Nano to Life: Interpreting graphs from Nanopore sequencing of bacterial genomes
    In this lesson, learners meet several scientists working on sustainable ways of recycling discarded electronics. Through an interactive H5P activity, participants watch videos and complete a series...

    Keywords: graph interpretationfmnNanoporeRepresentationBioGraphIrepresentation in STEMNanopore sequencing

    584

    views

    659

    downloads

    0

    comments

    0

    adaptations

    Modeling Changes in Probability of Presence of Myotis lucifugus Due to White Nose Syndrome: An Introduction to Logistic Regression in R
    In this lesson, students will learn more about the wildlife disease known as white nose syndrome and how it affects certain bat species more than others. Students will learn about the important...

    Keywords: ecologyconservationRStudiobatslogistic regressionGLMWildlife DiseaseWhite nose syndromelittle brown batsmyotis lucifugus

    658

    views

    403

    downloads

    0

    comments

    0

    adaptations

    2013-Michael-Evans-Growth and Decay
    Sometimes, we can describe processes of growth and decay—whether physical, chemical, biological or sociological—by mathematical models.

    Keywords: exponential growthexponential decayisotopespopulationsresource depletion

    116

    views

    38

    downloads

    0

    comments

    0

    adaptations

    2013-Greer-EtAl-Collaborative Understanding of Cyanobacteria in Lake Ecosystems
    We describe here a collaboration in which the mathematicians help collect data, the ecologists synthesize more data from model output than they can produce empirically, and the collaboration...

    Keywords: collaborationlakeecosystemcyanobacteriafield workcolonyGloeo

    107

    views

    38

    downloads

    0

    comments

    0

    adaptations

    2013-Deboeck-Bergeman-The reservoir model-DE model of psychological regulation
    The following article describes a differential equation model based on the concept of a reservoir for psychological regulation.

    Keywords: adaptive copingReservoirsNotre Dame Longitudinal Study on Agingoutputinput distributionstressorscoping resources

    95

    views

    44

    downloads

    0

    comments

    0

    adaptations

    2011-Kenny_Harwood-Modeling a RLC Circuit Current with Differential Equations
    This paper gives an abbreviated description of the photovaltaic effect (solar power production process) and then a RLC circuit will be modeled that is powered by a photovaltaic panel.

    Keywords: tuningfrequency responseLC circuitRLC

    114

    views

    43

    downloads

    0

    comments

    0

    adaptations

    2008-Chernyshov-EtAl-The Problem of Modelling of Economic Dynamics in Differential Form
    The authors have tried to analyze procedures of the construction of differential equations that are employed for modeling of macroeconomic processes. The results prove to be rather unexpected.

    Keywords: Fredholm integral equation ofLeontief’s modelmacroeconomic processes

    101

    views

    31

    downloads

    0

    comments

    0

    adaptations

    2007-Zenker-Rubin-Clermont-From inverse problems in mathematical physiology to quantitative differential diagnoses
    The improved capacity to acquire quantitative data in a clinical setting has generally failed to improve outcomes in acutely ill patients, suggesting a need for advances in computer-supported data...

    Keywords: physiologyinverse problem

    107

    views

    28

    downloads

    0

    comments

    0

    adaptations

    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.

    Keywords: spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions

    369

    views

    81

    downloads

    0

    comments

    0

    adaptations

    1999-PS_Crooke-S_Hota_JJ_Martini-JR_Hochkiss-A Mathematical Model for Carbon Dioxide Exchange
    A mathematical model is presented to study the effect of Tracheal Gas Insufflation (TGI) on the alveolar ventilation during passive, mechanical ventilation.

    Keywords: mechanical ventilationventilationcarbon dioxide exchangetracheal gas insufflationalveolar ventilationshunttwo-compartment model

    93

    views

    31

    downloads

    0

    comments

    0

    adaptations

    Learning R for Biologists: A Mini Course Grab-Bag for Instructors
    As biology becomes more data driven, teaching students data literacy skills has become central to biology curriculum. Despite a wealth of online resources that teach researchers how to use R, there...

    Keywords: Rdata analysisRStudio

    1933

    views

    248

    downloads

    0

    comments

    0

    adaptations

    Pick Your Poison: A Semester-Long Case Study for Undergraduate Toxicology
    The ability to collate information from diverse scientific resources and effectively employ scientific writing is an essential skill for scientists. This lesson describes a semester-long project...

    Keywords: risk assessmenttoxicologyPharmacologyregulationsdose responseADME

    2441

    views

    202

    downloads

    0

    comments

    0

    adaptations

    Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses
    Our understanding of microbiomes, or the collection of microorganisms and their genes in a given environment, has been revolutionized by technological and computational advances. However, many...

    Keywords: microbiomeDNA SubwayCyVerseCourse based undergraduate researchQIIME2ranacapa

    4043

    views

    267

    downloads

    0

    comments

    0

    adaptations

    Hands-On, Hands-Off: The Community College Genomics (ComGen) Course-Based Undergraduate Research Experience
    Science is a process of discovery where failure is inherent and iteration is necessary, yet instructors often teach the scientific process as if it is a controlled, highly supervised, confirmatory...

    Keywords: geneticssequencingDNAbacterium

    1379

    views

    159

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search