You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    2019-Hu-Treinen-One-step_method_for_modelling_longitudinal_data_with_differential_equations
    This study proposes a new approach to estimate the parameters in differential equation models used to describe non-linear trajectories of longitudinal data.

    Keywords: simulationparameter estimationshoppingfittingbehaviour

    134

    views

    36

    downloads

    0

    comments

    0

    adaptations

    It's a bird! It's a plane! It's biomechanics!
    Biomechanics is a discipline that draws from physics and engineering principles to understand the movement and structure of living organisms. It is highly interdisciplinary in nature and can be...

    Keywords: EvolutionecologybatphysiologyAnatomybirdFlightforcesinsect

    1002

    views

    147

    downloads

    0

    comments

    0

    adaptations

    1-047-Condensation-ModelingScenario
    We simulate the random motion of 200 particles in a 50 by 50 square in which a particle bounces off the two vertical and top walls and condenses on the bottom wall. Animations are produced and...

    Keywords: simulationsum of square errorscondensationbest fit

    322

    views

    678

    downloads

    0

    comments

    0

    adaptations

    2016-Lewnard-Townsend-Climatic and evolutionary drivers of phase shifts in the plague epidemics of colonial India
    Our analysis shows that historical datasets can yield powerful insights into the transmission dynamics of reemerging disease agents with which we have limited contemporary experience to guide...

    Keywords: infectious diseasepVector-Borne Diseaselagueplague

    109

    views

    40

    downloads

    0

    comments

    0

    adaptations

    1-190-IntroClass-ModelingScenario
    Students go through development of ideas in mathematical modeling with differential equations. They encounter fundamental ideas of unlimited population growth, limited population growth and a...

    Keywords: population dynamicspredator-preylogisticexponentialgraphical interpretationsqualitative analysis

    221

    views

    200

    downloads

    0

    comments

    0

    adaptations

    2004-Ledzewicz-Schattler-Application of Control Theory in Modelling Cancer Chemotherapy
    In this paper we discuss how to incorporate more realistic medical aspects of chemotherapy which hitherto have been neglected in the models.

    Keywords: optimal controldrug resistancepharmacokineticspharmacodynamicschemotherapy

    110

    views

    38

    downloads

    0

    comments

    0

    adaptations

    2012-Yuan_Yuan-A coupled plankton system with instantaneous and delayed predation
    We present two simple plankton population models: one has instantaneous predation, another has delayed predation.

    Keywords: phytoplanktonbifurcationorbitsherbivorous zooplanktoneffect of fishmaturation time delay

    110

    views

    35

    downloads

    0

    comments

    0

    adaptations

    7-020-ThermometerInVaryingTempStream-ModelingScenario
    We present a first order differential equation model for the temperature of a mercury thermometer which is sitting in a stream of water whose temperature oscillates. We suggest a solving strategy...

    Keywords: temperaturesteady statethermometerheat exchangetransfer functionphase lagInvers Laplace Transform

    218

    views

    159

    downloads

    0

    comments

    0

    adaptations

    Uninhibited Growth of Cells
    In this activity, students will explore the concept of binary fission, generation time, and bacterial growth curves, with an emphasis on the log phase. Students will use semi-log graphs and linear...

    Keywords: graphingexponential growthMicrobiology Educationmicrobiologybacteriagrowth rateUndergraduate STEM educationCommunity College Educationqbccmanipulate equationsCellular and Molecular BiologyCreate graphsInterpret graphsbinary fissionsemi-log graphlinear graphgrowth curvecreating graphsExponential and Logarithmic Functions

    818

    views

    1106

    downloads

    0

    comments

    0

    adaptations

    Build-a-Phage Lab Manual
    This is a lab manual for phage genome synthesis that includes both Building Block synthesis and Semi-synthetic assembly.
    1347

    views

    653

    downloads

    0

    comments

    0

    adaptations

    Doubling Time of Tumors
    This module introduces the calculation of potential doubling time of tumorous cells in the context of understanding the growth of a population of the cells. It is intended for an introductory...

    Keywords: linear regressionRatiosCell StructureOpenStaxCell Growth

    935

    views

    172

    downloads

    0

    comments

    0

    adaptations

    Universal Design for Learning and Accessibility of the Day
    Short, daily case activity on Universal Design for Learning and Accessibility at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: Universal Design for LearningSummer Workshop 2018

    1571

    views

    271

    downloads

    0

    comments

    1

    adaptations

    2012-Jambhekar-Breen-Extravascular Routes Of Drug Administration in Basic Pharamacokinetics
    This provides an excellent step-by-step of the physiology, construction of model, and notions like peak concentration as well as issues like lag time.

    Keywords: concentrationphysiologydrugslag timeExtravascularPharamacokineticspeak time

    155

    views

    41

    downloads

    0

    comments

    0

    adaptations

    2011-Nakul-Chitnis-Introduction to Mathematical Epidemiology - Deterministic Compartmental Model
    Deterministic compartmental models form the simplest models in the mathematical study of infectious disease dynamics. They assume that a population is homogenous (all people are the same) and the...

    Keywords: sensitivitydiseaseinfectionthresholdcompartmentbifrucation

    131

    views

    60

    downloads

    0

    comments

    0

    adaptations

    Graphing bacterial growth rates: semi-log graphs v linear graphs
    In this activity, students will explore the concept of binary fission, generation time, and bacterial growth curves, with an emphasis on the log phase. Students will use semi-log graphs and linear...

    Keywords: graphingexponential growthMicrobiology Educationmicrobiologybacteriagrowth rateUndergraduate STEM educationCommunity College Educationqbccmanipulate equationsCellular and Molecular BiologyCreate graphsInterpret graphsbinary fissionsemi-log graphlinear graphgrowth curvecreating graphsExponential and Logarithmic Functions

    2774

    views

    2565

    downloads

    0

    comments

    1

    adaptations

    SIR BuildIt
    An introduction to epidemiological models using interactive Excel worksheets

    Keywords: epidemiologymodelingTeaching Material @ BioQUEST_ESTEEMExcelinfectious diseaseInfectious Disease ModelingSIR modelsSIR

    3800

    views

    3260

    downloads

    0

    comments

    0

    adaptations

    Climate Change, Phenology, and Community Interactions: Helping students explore the complexity of changing ecosystems
    Students explore findings from long-term studies of migrating and hibernating animals at high elevation. Students then use this understanding to explore the phenology of species and possible...

    Keywords: species interactionsclimate changefmnphenologyDIGenvironmental variationtrophic mismatch

    1295

    views

    1441

    downloads

    0

    comments

    0

    adaptations

    Simulating Cortical Rotation, Axis Induction, and Experimental Embryology in Amphibian Embryos Using Clay Models
    The study of development requires learners to understand spatially complex concepts like embryo anatomy. Embryo anatomy is dynamic over time, and it is often manipulated by researchers in...

    Keywords: developmentXenopusfertilizationEmbryologyinductionSymmetry breakingOrganizerCortical rotationPatterning

    1079

    views

    130

    downloads

    0

    comments

    0

    adaptations

    2011-Lucas_Pulley-Analyzing Predator-Prey Models Using Systems of Ordinary Linear Differential Equations
    This research focused on applying biological mathematics to analyzing predation relationships, especially the relationship between the Canadian Lynx and the Snowshoe Hare.

    Keywords: simulationpredator-preyLotka-VolterrapopulationCanadian LynxSnowshoe Harecritical values

    173

    views

    48

    downloads

    0

    comments

    0

    adaptations

    1984-W_Brunner-D__Focht-Deterministic Three-Half-Order Kinetic Model for Microbial Degradation
    The kinetics of mineralization of carbonaceous substrates has been explained by a deterministic model which is applicable to either growth or nongrowth conditions in soil.

    Keywords: kineticsnonlinear regressionsum of square errorsMonodlinearizemineralizationsubstratescarbonaceous

    105

    views

    31

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search