You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Trinity Washington University- A Pipeline in Paradise
    Trinity Washington University-Discovering Planet Earth (ENVS 101- An introductory science course designed for non-science majors, study "A Pipeline in Paradise" case. Students were divided to four...

    Keywords: case studypipeline

    1676

    views

    790

    downloads

    0

    comments

    0

    adaptations

    Pipeline in Paradise
    Student were introduce to Pipeline in Paradise case study, they we divided in groups based on domains and they provided a recommendation to landowners.

    Keywords: student's experience

    1572

    views

    454

    downloads

    0

    comments

    0

    adaptations

    The Pipeline CURE: An Iterative Approach to Introduce All Students to Research Throughout a Biology Curriculum
    Participation in research provides personal and professional benefits for undergraduates. However, some students face institutional barriers that prevent their entry into research, particularly...

    Keywords: epigeneticsundergraduate researchmendelian inheritanceSelf-EfficacyCUREsnature of scienceResiliencecurriculum strategiesreprogramming

    2775

    views

    269

    downloads

    0

    comments

    0

    adaptations

    Introductory Data Science Pipeline Activity – Yellow Fever and Global Precipitation
    Students follow the steps of a tiny data science project from start to finish. They are given a research question "Are the number of cases of yellow fever associated with global average...

    Keywords: graphinghypothesis testingdata scienceData-based inquiry in the classroomglobal healthdata science educationyellow fever

    373

    views

    351

    downloads

    0

    comments

    0

    adaptations

    Microbiome Analysis with Oxford Nanopore 16S amplicon sequencing data
    The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with...

    Keywords: microbiome analysis toolNanopore

    1356

    views

    663

    downloads

    0

    comments

    0

    adaptations

    MiniWorkshop Follow-Up October 2, 2020
    A follow up to our mini workshop of August 14, 2020. Further information about the python pipeline for HGT and the new cytoscape lesson.

    Keywords: Bioinformatics Education

    1116

    views

    1416

    downloads

    0

    comments

    0

    adaptations

    A Pipeline in Paradise, Part 1: Learning the Relevant Science
    This case requires students to integrate information across the following five “knowledge domains” to develop a baseline understanding of the problem.

    Keywords: case studysocio-environmental data

    1148

    views

    235

    downloads

    0

    comments

    3

    adaptations

    The Molecular CaseNet Pipeline for Authoring, Piloting, and Evaluating Molecular Case Studies
    This poster provides an overview of the pipeline for authoring, piloting, and reviewing molecular case studies for publication in Molecular CaseNet.

    Keywords: resources @ Molecular CaseNet

    283

    views

    78

    downloads

    0

    comments

    0

    adaptations

    A Pipeline in Paradise
    I incorporated fracking into the case study instead of just focusing on building a pipeline, which allowed us to discuss fracking with this case study.
    1627

    views

    208

    downloads

    0

    comments

    0

    adaptations

    Machine Learning Meets Medicine with Jenessa Peterson
    Jenessa Peterson is a former teacher turned data scientist/engineer and Director of Learning Engineering at The Learning Agency. Her more recent work in data science has included building a...

    Keywords: data sciencemachine learningmedicine

    453

    views

    100

    downloads

    0

    comments

    0

    adaptations

    Students of Color Identify Ways Enivronmental Faculty Can Advance Racial/Ethnic Diversity in Undergraduate Programs
    This grounded theory study documents the experiences of students of color in undergraduate environmental degree programs. Its results can inform faculty, staff, and administrators about how to...
    1480

    views

    118

    downloads

    0

    comments

    0

    adaptations

    Expanding the pipeline: Engaging urban secondary school and college students in science and the environment
    This speed talk will describe three education projects that engage urban minority students in science and the environment.
    1493

    views

    459

    downloads

    0

    comments

    0

    adaptations

    Mini-Workshop August 14, 2020
    We reviewed the materials available on Genome Solver (other lessons here) and described our new python pipeline for examining horizontal gene transfer and a new synteny lesson in detail.

    Keywords: Bioinformatics Education

    1286

    views

    2067

    downloads

    0

    comments

    0

    adaptations

    Using DNA Subway to Analyze Sequence Relationships
    This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

    Keywords: phylogeneticsNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignmentC1. Role of bioinformaticsC2. Computational conceptsC4. Bioinformatics toolsC5. Data retrievalC8. Data typesIncubated at NIBLSE

    3123

    views

    593

    downloads

    0

    comments

    2

    adaptations

    1986-Istvan_Gyori-Connections between compartment systems pipes and integro-differential equations
    In this paper we give the mathematical description of models in which the mass transport between compartments requires a given definite time or transit times are distributed according to given...

    Keywords: physiologypipelinecompartmentbloodcirculationintegro-differential equation

    202

    views

    55

    downloads

    0

    comments

    0

    adaptations

    Expanding Undergraduate Participation in Computational Biology: Resources and Lessons Learned from a Hands-on Workshop
    Presentation on computational biology in undergraduate education at the 2019 Great Lakes Bioinformatics Conference

    Keywords: undergraduate educationcomputational biologybioinformatics

    1422

    views

    280

    downloads

    0

    comments

    0

    adaptations

    Genome Solver - A bioinformatics pipeline for community science
    The Genome Solver was an NSF-funded project developed as a way to train undergraduate life science faculty in basic web-based tools for bioinformatics. As part of the project we developed a one-day...

    Keywords: phylogeneticsbacteriophagebacteriaHorizontal Gene transferGenome Analysis

    326

    views

    71

    downloads

    0

    comments

    0

    adaptations

    CONNECT Network - Community of Neighboring and National Entrepreneurial Centers and Trainees Network (RCN-UBE Introduction)
    Our goal is to establish a community of practice that invites entrepreneurs, scientists, educators, and students to share expectations, experiences, and best practices in the field of biosciences...

    Keywords: RCN-UBE Introduction

    236

    views

    178

    downloads

    0

    comments

    0

    adaptations

    Overview of the Genomics Education Partnership
    Poster exhibited at the National Association of Biology Teachers (NABT) 2022 conference providing an overview of the Genomics Education Partnership including its benefits to faculty, students, and...

    Keywords: course-based undergraduate research experienceGenomics Education PartnershipNABT 2022

    804

    views

    112

    downloads

    0

    comments

    0

    adaptations

    The Genomics Education Partnership: Democratizing Genomics Research Experiences Nationwide
    This poster provides a general overview of the Genomics Education Partnership (GEP), and information on our Diversity, Equity, and Inclusion efforts are outlined in the accompanying video.

    Keywords: course-based undergraduate research experienceBioinformatics and Genomicsgenomics teaching and CUREsdiversity equity and inclusion

    955

    views

    262

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search