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    Population Bottlenecks: Heterozygosity vs. Allelic Diversity
    This module introduces heterozygosity and allelic diversity in the context of understanding population bottlenecks. It is intended for an introductory biology audience.

    Keywords: Ratiosexponential equationsAlgebraGenetics and Evolution

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    Web Popgen
    A Hardy-Weinberg simulation program.

    Keywords: Hardy-Weinbergpopulation geneticscomputer simulationsGenetic DriftmutationNatural Selection

    1995

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    327

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    Data Management using National Ecological Observatory Network's (NEON) Small Mammal Data with Accompanying Lesson on Mark Recapture Analysis
    Students use small mammal data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by estimating small mammal...

    Keywords: data managementspreadsheetssmall mammals community dynamicsNEONCapture mark-recaptureResource TypeNational Ecological Observatory Network

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    2008-William_Revelle-Cues Tendencies and Actions-The Dynamics of Action Revisited
    This article describes a reparameterization of the original theory of dynamics of action and applies the power of simple modeling to the study of action, emotions, and social behavior.

    Keywords: psychologytask referenceachievement motivationdynamics of action

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    2012-Augustus-Wali-Mathematical Modeling of Uganda Population Growth
    The purpose of this paper focuses on the application of logistic equation to model the population growth of Uganda using data from 1980 to 2010 (inclusive).

    Keywords: population growthlogistic growthDrug and Alcohol detoxificationcarrying capacityvital coefficients

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    50

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    SOAR - San Francisco Bay Research Coordination Network for Student Opportunities in Avian Research to enhance STEM education and assess human impacts on avian biodiversity (RCN-UBE Introduction)
    The San Francisco Bay Research Coordination Network for Student Opportunities in Avian Research (SOAR) brings together faculty, students, and volunteers to implement an experiential learning and...

    Keywords: RCN-UBE Introduction

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    67

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    2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
    I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can...

    Keywords: biologytextbooksystemsdyanmical system

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    65

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    2016-Wilkie-EtAl-Using ODEs to Explore Cancer-Immune Dynamics and Tumor Dormancy
    Here we present a general method using ordinary differential equations (ODEs) to model and analyze cancer-immune interactions, and in particular, immune-induced tumor dormancy.

    Keywords: cancertumor-inhibiting cytotoxic actiontumor-promoting inflammationimmune-induced tumor dormancytumor growth dynamics

    151

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    47

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    EREN PFPP Species Composition Curriculum Module with Data
    In this lab, students will learn foundational concepts of forest community dynamics and apply quantitative skills to data analysis and interpretation activities. Students will use tree plot data...

    Keywords: forest ecologyecologydata analysisdata in the classroomCommunity Ecologyscience educationcourse-based undergraduate research experiencecurriculum materialsPlant EcologyPlant community assemblyCollaborative researcheren

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    Deme 2.0
    This workbook simulates the population genetics of a single gene with two alleles. It can simultaneously model up to three local populations, which may differ in their selection coefficients.

    Keywords: population geneticsGenetic DriftNatural Selection

    20

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    4

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    2006-Shigui_Ruan-Delay differential equations in single species dynamics
    In this survey, we shall review various delay differential equations models arising from studying single species dynamics.

    Keywords: allee_effectdelayed biological systemsfood limitperiodiciityrecruitment modelRegulation of Haematopoiesis

    104

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    63

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    Two-Species Model
    These two Excel worksheets simulate the population growth of two interacting species. In isolation, each species grows logistically, but interaction effects between species may limit or enhance...

    Keywords: population growthcompetition modelsLotka-Volterra

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    3

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    Evolution Through Natural Selection
    This Excel workbook simulates the population genetics of a single gene with two alleles, allowing the user to set the initial allele frequencies and enter parameters for a variety of different...

    Keywords: population geneticsNatural Selection

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    4

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    ESS: Evolutionary Stable Strategies Game Theory Module
    This Excel workbook illustrates a number of ESS examples. Each example allows the user to manipulate the initial population for each strategy and the fitness payoffs and costs for each strategy.

    Keywords: population geneticsfitnessgame theorySequence alignmentevolutionary stable strategies

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    2011-Brian_Winkel-Parameter Estimates in Differential Equation Models for Population Growth
    We estimate the parameters present in several differential equation models of population growth, specifically logistic growth models and multiple species competition models.

    Keywords: logisticpopulationparameciaGausegradient search

    168

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    The Science and Ethics of Gene Drives: An Active Learning Lesson in Genetics
    Coursework connecting biology to socially relevant issues and ethical questions can help students think about biology in interdisciplinary terms. Gene drives represent one topic involving both...

    Keywords: bioethicsCRISPR/Cas9Genetic modificationGene drives

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    7

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    SNAPSHOT SERENGETI: Analyzing Wildlife Ecological Relationships in an upper-level Ecology course
    Two assignments were created to develop skills in ecological hypothesis testing, data analysis and interpretation using the Snapshot Serengeti and Gorongosa camera trap data and graphical...

    Keywords: hypothesis testinggraphical analysis and interpretationsavannah biomeecological relationshipscompare and contrast to primary literature

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    2010-Del-Ciello-EtAl-Modeling Disease
    We model the transmission of a disease through a population. Such modeling is very important to the study of epidemiology and the practice of medicine.

    Keywords: diseasespreadcarriessymptomaticasymptomatic

    122

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    35

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    Mark-Recapture
    A common method used to estimate the population size of a species is the Mark-Recapture method.

    Keywords: mark-recapture analysispopulation estimation

    19

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    4

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    Leslie/Lefkovitch Matrix Models for Age or Stage-structured Populations
    This Excel workbook uses the Leslie matrix model for population projection of age-class structured populations, and also allows Lefkovitch matrix models for stage-class structured populations.

    Keywords: survivalpopulation ecologyfecundityLeslie matrixeigenvalueseigenvectorsLefkovitch matrixage-class structured populationsstage-class structured populationsreproductive value

    44

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    20

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