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    2012-Gilbert_Koch-Modeling of Pharmacokinetic and Pharmacodynamics of Cancer and Arthritis
    In this work we develop preclinical PKPD models based on fundamental biological and pharmacological principles. Equipped with a PKPD model, different dosing schedules could be simulated.

    Keywords: cancerpharmacodynamicsPKPD modelarthritisPharmacokineticanticancer

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    2011-Nguyen-Shi-Modeling the absorption circulation and metabolism of tirapazamine
    This apparently is a student project and it develops the kinetic model, uses Matlab for numerical solution, analytic solution and numerical solution.

    Keywords: absorptionMichaelis-MentenMetabolismdrug metabolismcirculation

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    2005-Albert_Tarantola-Inverse Problem Theory and Methods for Model Parameter Estimation
    This is a bible of approaches to support parameter estimation approaches in inverse problems. Theory and algorithms are offers with examples.

    Keywords: Algorithminverse probleminverse

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    Coevolution or not? Crossbills, squirrels and pinecones
    This case reinforces the concept of coevolution as a reciprocal change in genetic structure between or among two or more populations, by having students analyze and interpret data, build a...

    Keywords: fitnessCoevolutionCo-adaptation

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    2017-Biswasa-EtAl-Mathematical Modeling Applied to Sustainable Management of Marine Resources
    We study a nonlinear mathematical model of fishery management to understand dynamics of a fishery resource system in an aquatic environment that consists of two zones; one free fishing zone and...

    Keywords: natural resourcesmarine resourcesfishery model

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    2012-Rusinko-Swan-Agent-Based Fabric Modeling Using Differential Equations
    We use an agent-based modeling software, NetLogo, to simulate fabric drape by applying a modified mass spring system.

    Keywords: NetLogospring massagent-baseddrapingyarnfabric

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    2007-Choisy-Guégan-Rohani-Mathematical Modeling of Infectious Diseases Dynamics
    After presenting general notions of mathematical modeling (Section 22.2) and the nature of epidemiological data available to the modeler (Section 22.3), we detail the very basic SIR epidemiological...

    Keywords: stochasticSIR modeldeterministicincubationinfectives

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    2004-Mark_McCartney-Using_second-order_ordinary_differential_equations_to_model_traffic_flow
    A simple mathematical model for how vehicles follow each other along a stretch of road is presented. The resulting linear second-order differential equation with constant coefficients is...

    Keywords: differential equationstraffic flowvehicle followsecond order

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    5-077-MandMAttritionWarfare-ModelingScenario
    Students model attrition between two opposing forces using M&M candies and discover a system of linear differential equations of order one, often called the Lanchester equations.

    Keywords: attritionLanchester modelpredator-predatorN-square Law

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    6-067-LotkaVolterra-ModelingScenario
    This modeling scenario guides students through the process of fitting the Lotka-Volterra model of two differential equations to a real time series observational data. Students use the capabilities...

    Keywords: time seriesdatacompetitionLotka-Volterramodel fittingpredictiongauseRexperimental

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    9-010-TravelingWave-ModelingScenario
    Students are taken through a traveling wave analysis of a porous medium model. While the starting point is a nonlinear partial differential equation model, after a change of variables, students...

    Keywords: traveling wavesseepage velocityporous medium

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    2014-Wrona-EtAl-Two-compartment model as a teaching tool for cholesterol homeostasis
    To investigate cholesterol transport in the circulatory system, we have previously developed a two-compartment mathematical model. Here, we show how this model can be used as a teaching tool for...

    Keywords: metabolic syndromecompartment modelcholesterolhigh blood cholesterol

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    2014-Hrydziuszko-EtAl-Mathematical Two-compartment Model of Human Cholesterol Transport
    We develop a two-compartment mathematical model to investigate cholesterol transport in the circulatory system and its de novo synthesis in the liver.

    Keywords: metabolic syndromecompartmentcholesteroltwo-compartment modelcholesterol transport

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    2013-Clarke-Skirba-Rationale and resources for teaching the mathematical modeling of athletic training and performance
    It is advisable that the professionals involved learn the various tools available for designing effective training programs.

    Keywords: fitnessexercise physiologycritical power modelBanister impulse-response modelcoaching educationphysical fitnessperformance modeling

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    2009-Su-EtAl-Fitting Compartmental Models to Multiple Dose Pharmacokinetic Data using SAS
    In the case of a multiple dose study where subjects experience different dosing times, a superposition principle can be used to recursively account for each additional dose.

    Keywords: SASsuperpositionpharmacokineticscompartmental modelsmultiple dose

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    1988-EY_Rodin-N_Taber-Yeast Growth Modelling in a Laboratory
    Modeling simple growth with some missing data and doing linear regression for parameter estimation in closed form solution of differential equation model and data.

    Keywords: regressionyeastgrowth

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    Marriage age model ODD
    Supplemental resource from ABM

    Keywords: case studytextbookNetLogoagent-based modelingIndividual & Agent Based ModelingODD protocol

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    An Introduction to the Squirrel-Net Teaching Modules
    Although course-based undergraduate research experiences (CUREs) are gaining popularity in biology, most are designed for benchwork-based laboratory courses while few focus on field-based skills....

    Keywords: ecologybehaviortrade-offsScientific ProcessSquirrel-Net

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    Garden Variety Mutations: Using Primary Data to Understand the Central Dogma in Large-Lecture Introductory Biology
    The ability to interpret and create an argument from data is a crucial skill for budding scientists, yet one that is seldom practiced in introductory courses. During this argumentation module,...

    Keywords: mutationtranscriptiongene expressioncentral dogmatranslationgel electrophoresisGenotype/Phenotype

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    Using Open-Source Bioinformatics and Visualization Tools to Explore the Structure and Function of SARS-CoV-2 Spike Protein
    The relationship between protein structure and function is a foundational concept in undergraduate biochemistry. We find this theme is best presented with assignments that encourage exploration and...

    Keywords: bioinformaticsmolecular modelingCOVID19protein structure and functionUCSF ChimeraSARS-CoV-2 spike proteinACE2 receptor

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