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    Population Bottlenecks: Heterozygosity vs. Allelic Diversity
    This module introduces heterozygosity and allelic diversity in the context of understanding population bottlenecks. It is intended for an introductory biology audience.

    Keywords: Ratiosexponential equationsAlgebraGenetics and Evolution

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    Web Popgen
    A Hardy-Weinberg simulation program.

    Keywords: Hardy-Weinbergpopulation geneticscomputer simulationsGenetic DriftmutationNatural Selection

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    5-026-Evictions-ModelingScenario
    In this project, students develop two SIS models to study eviction trends in a population of non-homeowner households using an actual eviction rate. Students can calculate solutions, sketch the...

    Keywords: carrying capacitycompartmentevictionhomeownerSIS modelhomelessness

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    2005-P_Howard-Modeling with ODE
    In these notes we consider three critical aspects in the theory of ordinary differential equations: developing models of physical phenomena, mathematically well-posed, solving ODE numerically .

    Keywords: Fluid Mechanicscompartmentpopulationsvariational methodsHamiltonian mechanics

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    5-023-FakingGause-ModelingScenario
    We use a fake or toy data set to permit discovery of the parameters in a two population protozoan model used to study paramecium and yeast competition in the 1930's studies of G. F. Gause in the...

    Keywords: competitionlogisticyeastGauseparameciumpoplulation

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    6-011-HumansVsZombies-ModelingScenario
    Students analyze the SIR differential equations model in the context of a zombie invasion of a human population. Students analyze a two equation system representing only two populations, humans...

    Keywords: zombiesinfectionSIR models

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    6-020-AlgaePopulationSelf-Replenishment-ModelingScenario
    This modeling scenario investigates the massive algal blooms that struck Lake Chapala, Mexico, in 1994. A

    Keywords: algaepopulationMexicoqualitativecompartmentlinearizationJacobianlaknondimensionalizationpplane

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    Moths and Frogs and E. coli, Oh My!: Agent-based Modeling of Evolutionary Systems
    In evolution classrooms, introducing and reinforcing the idea of genetic drift and random selection can be challenging, as can be reinforcing appropriate mental models of evolution. Agent-based...

    Keywords: modelingEvolutionecologyagent-based modelingGenetic Driftenvironmental scienceNatural Selectioncompetitive coevolutionsimulation modelingevolutionary reasoning

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    An Introduction to agent-based modeling.
    Introductory level textbook based on a collection of lecture notes from an undergraduate course on agent-based modeling at Arizona State University.

    Keywords: textbookcurriculumNetLogoagent-based modelingIndividual & Agent Based Modelingcourseundergraduate educationResources @ QUBES - Teaching & Reference

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    Building a Model of Tumorigenesis: A small group activity for a cancer biology/cell biology course
    The multistep nature of tumorigenesis is a foundational concept in the context of Cancer Biology. Many students do not appreciate the complex nature of cancer development nor do they understand how...

    Keywords: pathwayscancerMolecular AlterationsRetrospective dataTumorigenesis

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    Disease Spread Simulation with M&M's and Information on the wider SIMIODE community
    This is a Student Version of a Modeling Scenario from the community, SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations at www.simiode.org

    Keywords: resourcesdifferential equationsmodelingsimulationmoduledataepidemicsdiseasecommunityapplied mathematicsResources @ SIMIODEretinal surgeryinsect colonyLSDm&mparameter estimationin-class activityproject

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    2013-Brian_Winkel-Reflecting_On_Walls
    We reflect on our passion for teaching mathematics, useful mathematics, by considering our understandings of just what a wall is and what a wall means to us.

    Keywords: mathematicsmathematical modellearningcell wall

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    2001-Smith-Moore-The SIR Model for Spread of Disease
    A multiple part tour of SIR Models freely available with Maple, Mathematics, and MatLab support files at MAA site.

    Keywords: epidemicSIR modelEuler's methodherd immunityHong Kong flu

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    It's a Substrate... It's a Protein...No - It's an Enzyme! Teaching Using 3D Serine Protease Physical Modeling Activities to Confront Misconceptions.
    Reported misconceptions of enzyme-substrate interactions highlight the necessity for better, targeted instructional tools and assessments. A series of active learning activities with corresponding...

    Keywords: Protein StructureEnzymes-Substrate InteractionsNoncovalent InteractionsGeometric ComplementaryElectronicsStereochemistrySerine Proteases

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    To Vaccinate or Not to Vaccinate
    To vaccinate or not to vaccinate, that is the question. Much of the recent trend in society against vaccination is that the general population does not understand 1) how vaccines work and 2) how...

    Keywords: pathogenELISAimmunityantibodyAntigen

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    Furry with a chance of evolution: Exploring genetic drift with tuco-tucos
    Genetic drift is an important mechanism of evolution, yet undergraduates often fail to understand how it leads to evolutionary change due in part to its random nature. This lesson plan describes a...

    Keywords: EvolutionGenetic DriftBottle neckFounder effectRandom evolutionary processes

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    2000-Armson-Cockroft-Stone-Modelling a barnacle goose population
    This paper explores a number of models for the growth of a barnacle goose population. These geese spend their summers breeding in Spitsbergen and then winter in Caerlaverock on the Solway Firth....

    Keywords: population dynamicsexponentiallogistic equationBarnacle Geese

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    The Genomics Education Partnership: Democratizing Genomics Research Experiences Nationwide
    This poster provides a general overview of the Genomics Education Partnership (GEP), and information on our Diversity, Equity, and Inclusion efforts are outlined in the accompanying video.

    Keywords: course-based undergraduate research experienceBioinformatics and Genomicsgenomics teaching and CUREsdiversity equity and inclusion

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    Global Temperature Change in the 21st Century: An Introduction to Global Climate Models and Graphing in Excel (Adapted for Non-Majors)
    Students link human behavior in various climate change scenarios to predicted temperature outcomes at both local (their assigned Latitude) and global (Latitudinal trends) scales. This adaptation is...

    Keywords: ExcelResources @ ESA - TIEEecology labclimate changeenvironmental scienceglobal changehuman-environmental interactionsSimple Linear Regressionhuman impactsinclusive pedagogy-FMN

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    The Science Behind the ACTN3 Polymorphism
    A common polymorphism in the alpha-actinin-3 (ACTN3) gene results in the lack of ACTN3 protein expression in fast twitch muscle fibers in ~16% of the human population (1). This genetic change has...

    Keywords: protein structure and functionhuman genetic variationskeletal muscle physiology

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