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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    HITS: A network to promote high-throughput (HT) approaches through inquiry-based case studies
    Poster on the HITS project presented at the 2018 Annual Fall Conference for the National Center for Case Study Teaching In Science.

    Keywords: case studiesbig dataHITSHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s StudentsAnnual Fall Conference for the National Center for Case Study Teaching In ScienceBuffalo case studyHigh-throughput (HT) approaches

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    Module 4: What Kind of Data Goes in a Field Notebook?
    The goal of this activity is to introduce students to biological field notebooks and how they are used by scientists during field work. Specifically, students will learn what a botanist collecting...

    Keywords: Herbarium digitizationField notebookTimothy Plowman

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    5-024-PhGreatLakes
    In this teaching modeling scenario, we demonstrate how lessons on salt-tank compartmental modeling can be used to predict phosphorus levels in the Great Lakes.

    Keywords: Great Lakeslimnologycomparmentpollutioncompartmental modelsphosphorous

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    Electronic Lab Notebooks: Options for Building Data Management and Quantitative Reasoning Skills
    Presentation on Electronic Notebooks and Lab Archives given at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: 2019 QUBES/BioQUEST Summer Workshopelectronic notebookselectronic lab notebookslab archives

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    Parabolas Everywhere?
    In this lesson students will use mathematical models to describe real-world objects and to gain better understanding of quadratic functions.
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    Biogeography of Hantavirus Hosts
    Using QGIS, this module introduces students to zoonotic pathogens, host biogeography, the "One Health" concept, forming hypothesis, and natural history museums within the Hantavirus system.

    Keywords: human-environmental interactionsmammalsbiogeographyhypothesis formulationdigitized natural history collectionshuman healthQGISzoonotic diseasesone healthrodentsPathogens

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    National Institute for STEM Evaluation and Research (NISER)
    Poster on program evaluation presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: evaluationNISERprogram evaluationSummer Workshop 2018

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    2018-Meredith_Greer-Ella_Livesay-Mathematical Epidemiology Goes to College
    In this article we present models that were inspired by two real-life outbreaks at a small residential college campus: H1N1 influenza in 2009 and, surprisingly, mumps in 2016.

    Keywords: epidemiologydiseaseH1N1Influenzaoutbreak

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    6-016-PandemicModeling-ModelingScenario
    The recent coronavirus outbreak has infected millions of people worldwide and spread to over 200 countries. How can we use differential equations to study the spread of coronavirus?

    Keywords: population dynamicsinfectious diseasediseaseEbolaeSIR modelsCOVID19pandemicepidemicreproduction number

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    Using Linear Regression to Explore Environmental Factors Affecting Vector-borne Diseases
    In this activity students will use linear regression to analyze real data on vector-borne diseases and explore how environmental factors such as climate change or population density influence the...

    Keywords: ecologygraphingmicrobiologyqbccUnderstanding ratesCreate graphsInterpret graphsinterpret tablesConcepts in Statistics

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    Exploring global environmental change issues: Using an online spatial data sharing platform in the classroom
    Presentation made by Kai Foster as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America annual...

    Keywords: Ecological Society of America

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    1-102C-CancerGrowth-ModelingScenario
    This module guides students in the use of differential equation models to predict cancer growth and study treatment outcomes. Several classical models for cancer growth are presented including...

    Keywords: optimizationcancerlogisticexponentialpredictiontumorgrowthdata fittingpower lawBertanffyGompertz

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    Inquiry-based hypothesis testing using phylogenetic trees in MEGA
    A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...

    Keywords: phylogeneticsbioinformaticsFASTANCBIBLASTmultiple sequence alignmentsequence similarityCourseSourceZika virusMEGAalcohol metabolism

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    Island Biogeography
    The students will practice the basic code to test MacArthur and Wilson’s (1967) Island Biogeography model, focusing on how island size, distance, and perturbation affect species numbers.
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    Examining human impacts on tusk evolution in elephants using authentic research data using Serenity
    In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...
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    Remote Sensing of Plants and Topography in R (Project EDDIE) for Advanced GIS class
    Students will explore different possible abiotic drivers of plant growth, defined as greenness and height. In the final step, students will analyze data from around the United States and consider...
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    Grassy Narrows and Muskrat Falls Dam: Hypothesis Testing and t-Tests
    Students are introduced to concepts of hypothesis testing using elementary hypothesis tests, t-tests, and p-values as they compare a given fish population for methylmercury levels (using real and...

    Keywords: statisticsmathematicsbiostatisticsecologybiologygraphingp-valuest-testshypothesis testingin-class activityZoologymercury biogeochemistrybiostatistics - generalfish populationqbccBiogeochemical cyclesInterpret graphsSolving Equations and InequalitiesConcepts in StatisticsElementary Hypothesis TestingMethylmercurydamsBioaccumulationtraditional dietsmercurymercury poisoningnative peopleindigenous populationCanadahydroelectricexplaining statisticsusing statisticsMake probability calculations

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    Investigating Evidence for Climate Change (Project EDDIE)
    This multi-part activity allows students to discover the relationships between CO2 and temperature and how these variables have changed over time using real-world data.

    Keywords: Excelclimate changeGlobal Temperature Changeco2ice core data

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    An evolution curriculum designed around understanding the rise and spread of drug-resistant pathogens
    Poster on teaching concepts in evolution and data science skills in an upper level Biology elective at Spelman College presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: EvolutionRdata sciencedrug resistanceSummer Workshop 2018

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    A Growing Concern: Sustaining Soil Resources through Local Decision Making
    This module addresses this need by providing students the opportunity to examine the differences between intensively managed agricultural landscapes (e.g. grazelands, conventional tillage) and...

    Keywords: sustainabilityenvironmental sciencegeologysoil scienceResources @ InTeGrate

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