QUBES will have scheduled maintenance work beginning on Wednesday, June 26, 2024, 4pm ET/1pm PT. The platform will operate normally for most of the day, except for an extended outage period lasting no more than 4 hours. All running tool sessions will expire during the maintenance window. Please plan accordingly and we do apologize for any inconvenience. close

You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    BioNumbers-the database of key numbers in molecular and cell biology
    BioNumbers is a database of key numbers in molecular and cell biology—the quantitative properties of biological systems of interest to computational, systems and molecular cell biologists

    Keywords: dataResources @ BioNumbersNumbersestimationdatabaseResources @ QUBES - Teaching & Reference

    953

    views

    155

    downloads

    0

    comments

    0

    adaptations

    Characterizing the Quantitative Biology Curricula from Institutions Across the United States
    Undergraduate research poster presented at the Undergraduate Research Symposium at the University of Pittsburgh in 2015.

    Keywords: Mathematical Biologycurriculumundergraduate researchinterdisciplinaryPresentation

    1530

    views

    237

    downloads

    0

    comments

    0

    adaptations

    2020-Chen_Et_Al-MathModel_Simulation_Phase-Based_Transmissability_Corona_Virus
    In this study, we developed a Bats-Hosts-Reservoir-People transmission network model for simulating the potential transmission from the infection source (probably be bats) to the human infection.

    Keywords: basic reproduction numbercoronavirusnext generation matrixtransmissibilitynovel coronavirus

    85

    views

    33

    downloads

    0

    comments

    0

    adaptations

    1-038-Ebola-ModelingScenario
    Students will use data published by the World Health Organization to model the 2014 outbreak of the Ebola virus in West Africa. We begin with a simple exponential growth model and move through the...

    Keywords: population dynamicsdata analysisexponential growthEbolalogisticepidemic

    1067

    views

    3953

    downloads

    0

    comments

    0

    adaptations

    2018-LA_Peletier-Ordinary Differential Equations in Pharmacodynamics
    Good mix of theory, application, solution technique in a number of areas of applications of differential equations. Develops qualitative behavior issues. Exercises, but not about models, more about...

    Keywords: compartment modelpharmacokineticspharmacodynamicsorbitsturnover

    162

    views

    84

    downloads

    0

    comments

    0

    adaptations

    2015-Heiko_Enderling-Integrating experimental data to calibrate quantitative cancer models
    For quantitative cancer models to be meaningful and interpretable the number of unknown parameters must be kept minimal. We focus on a tumor hierarchy of cancer stem and progenitor non-stem cancer...

    Keywords: cancertumorfittingagent-based

    105

    views

    81

    downloads

    0

    comments

    0

    adaptations

    2007-Graham-Lerch-Parameter Recovery for a Differential Equation Model
    This article presents a project for a differential equations class using an inverse problem based on the second order differential equation that models and electrical circuit.

    Keywords: laboratorydata collectionRLC circuitinvers problemelectrical circuit

    96

    views

    27

    downloads

    0

    comments

    0

    adaptations

    2013-Brian_Winkel-An_Optimal_Control_Model_in_Insect_Colonies
    we find and develop background material on an application of optimal control theory to model the evolutionary strategy of an insect colony to produce the maximum number of queen or reproducer...

    Keywords: insect colonyoptimal controlparameter

    112

    views

    11

    downloads

    0

    comments

    0

    adaptations

    6-016-PandemicModeling-ModelingScenario
    The recent coronavirus outbreak has infected millions of people worldwide and spread to over 200 countries. How can we use differential equations to study the spread of coronavirus?

    Keywords: population dynamicsinfectious diseasediseaseEbolaeSIR modelsCOVID19pandemicepidemicreproduction number

    260

    views

    349

    downloads

    0

    comments

    0

    adaptations

    Using Bioinformatics to Understand Genetic Diseases: A Practical Guide
    This Practical Guide outlines a number of basic bioinformatics approaches that can be used to understand the molecular basis of genetic diseases.
    840

    views

    178

    downloads

    0

    comments

    0

    adaptations

    Java Applets for Power and Sample Size
    This is a Java application that allows you to do power and sample-size calculations for a number of standard statistical models.

    Keywords: statisticspowerstatistical powersample sizeeffect sizestatistical tests

    1529

    views

    574

    downloads

    0

    comments

    0

    adaptations

    IPMpack: an R package for Integral Projection Models
    IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models.

    Keywords: RR-Forgeanimalbiostatisticscomparative analysisecologylongitudinal datamodel comparisonmodel estimationprojectionssurvivaltime seriestrajectoryIPMintegral projection modelsResources @ QUBES - Software

    1420

    views

    391

    downloads

    0

    comments

    0

    adaptations

    Birthday Problem and Class Phenotypic Probabilities
    An Excel workbook exploring two related applications, the Birthday Problem and Class Phenotypic Probabilities. Students enter their own phenotypes into the workbook.

    Keywords: ExcelResources @ ESTEEMphenotypic probabilityallelic frequency

    993

    views

    203

    downloads

    0

    comments

    0

    adaptations

    The Science Senses
    This video introduces the common thread that runs through the Science Forward course: Sciences Sense.

    Keywords: videosnumber senseScience Forwardscience sense

    904

    views

    163

    downloads

    0

    comments

    0

    adaptations

    Cell Division and Cancer Risk Data Point
    Cancer is typically attributed to hereditary and environmental factors, but these only explain a fraction of overall cancer risk. This activity explores a third factor.

    Keywords: Resources @ HHMI - BioInteractivecancerScientific ProcessStatistics and MathScientific Methodologybiology of cellscell growth and divisionHigh School

    2482

    views

    339

    downloads

    0

    comments

    1

    adaptations

    Adaptation of Environmental Pollution & Public Health for Water and Emerging Contaminants (Project EDDIE)
    Environmental health is a field of study within public health that is concerned with human-environment interactions, and specifically, how the environment influences public well-being. In this...

    Keywords: public healthProject EDDIEwater qualitypollutionpfas

    292

    views

    253

    downloads

    0

    comments

    0

    adaptations

    Breaking Bricks: A Hands-On Model of Enzyme Kinetics and Inhibition
    Enzyme kinetics and the impacts of inhibitors on the enzyme's maximal velocity and ability to bind substrates are important topics in cell biology and biochemistry. However, these topics can be...

    Keywords: kineticsEnzymecompetitive inhibition

    3154

    views

    710

    downloads

    0

    comments

    0

    adaptations

    2018-Adeniji-EtAl-InverseProblemHolling-TannerModel
    We consider the inverse problem of parameter identification of nonlinear system of ODEs for a specific case of complete information about solution of the Holling-Tanner model for finite number of...

    Keywords: goal functionabsolute error curvesinvers methodholling-Tanner model

    117

    views

    49

    downloads

    0

    comments

    0

    adaptations

    2008-Huet-Deffuant-Differential Equation Models Derived from an Individual-Based Model Can Help to Understand Emergent Effects
    We study a model of primacy effect on individual's attitude. Typically, when receiving a strong negative feature first, the individual keeps a negative attitude whatever the number of moderate...

    Keywords: agent-based modelprimacy effectinformation filteringaggregated modelcollectiveinteractionsdouble-modelling

    102

    views

    45

    downloads

    0

    comments

    0

    adaptations

    2018-Nyanginja-Angwenyi-Musyoka-Orwa - Mathematical modeling of the effects of public health education on tungiasis
    In this paper, we formulate and study a mathematical model for the dynamics of jigger infestation incorporating public health education using systems of ordinary differential equations and...

    Keywords: diseaseendemicreproduction numbertungiasisjigger infestation

    124

    views

    35

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search