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    Pokemon Go and Ecology
    These are resources associated with using Pokemon Go to teach concepts in Ecology.

    Keywords: Pokemon Go

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    Spreadsheet Tutorial 2 - Autofill Data, Cell References, and Standard Deviation
    Generate a table with autofill, and use absolute cell reference to calculate variance and standard deviation.

    Keywords: Resources @ HHMI - BioInteractiveScientific ProcessStatistics and MathScientific MethodologyHigh School

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    2021-G_Nagy-Ordinary_Differential_Equations
    This is an introduction to ordinary differential equations. We describe the main ideas to solve certain differential equations, like first order scalar equations, second order linear equations, and...

    Keywords: differential equationstextbook

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    Science Learning Spaces in undergraduate courses ( virtual and face to face) : Impact of Technology, Resources and Active Learning Activities
    Science Learning Spaces are evolving in both face to face and virtual learning environments. Effective utilization and identification of appropriate learning spaces helps in formation of engaging...

    Keywords: resourcesstemfaculty developmentUndergraduatesciencetechnologyWorkshop materialAnalysislearning spacescience learning spacemajor learning spaceminor learning spacelearning activitiesthinking

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    2017-Jean-Roux-Mathematical Models in Air Quality Problems
    Presents many models with analysis in air quality control. Starts with chemical kinetics models and builds complexity to PDE models.

    Keywords: air pollution effects on forest ecosystemsfinite volume methodboundary layerchemical kineticsfinite differenceemissionsdepositionsadvection

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    Get Started With GIS in Open Source Python Workshop
    There are a suite of powerful open source python libraries that can be used to work with spatial data. Learn how to use geopandas, rasterio and matplotlib to plot and manipulate spatial data in...

    Keywords: data analysisdatadata typesdata visualizationdata scienceearth sciencepythonremote sensingGeographic Information System (GIS)data science educationcomputer programmingwildfireearth anlaytics

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    1-060-RegularPerturbation-TechniqueNarrative
    This paper presents an introduction to a set of analytical approximations referred to as regular perturbation. This is a particular mathematical tool within the broader set of perturbation...

    Keywords: perturbationregular perturbationasymptotic expansionsanalytical approximationBernoulli equation

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    2008-Yang-EtAl-Differential Equation Model of HIV Infection of CD T-Cells with Delay 
    Abstract: An epidemic model of HIV infection of CD4+ T-cells with cure rate and delay is studied. We include a baseline ODE version of the model, and a differential-delay model with a discrete time...

    Keywords: virusT cellsHopf bifurcationendemic equilibrium

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    2001-Smith-Moore-The SIR Model for Spread of Disease
    A multiple part tour of SIR Models freely available with Maple, Mathematics, and MatLab support files at MAA site.

    Keywords: epidemicSIR modelEuler's methodherd immunityHong Kong flu

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    1999-McCartney-Carey-Modelling Traffic Flow Solving and Interpreting Differential Equations 
    A simple mathematical model for how traffic flows along a road is introduced.

    Keywords: traffictraffic flow

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    1-003-IntroNumericalMethods-TechniqueNarrative
    We develop elementary approaches to numerically solving first order differential equations with Euler's Method, Improved Euler's Method and develop these geometrically to compute numeric solutions...

    Keywords: analytic solutionEuler's methodimproved Euler's method

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    1-014-DrainingContainers
    Given two rectangular circular cylinders of water with the same volume, but different radii, with a small bore hole of same radius on the center of the bottom through which water exits the...

    Keywords: containerstankflowTorricelli's Lawdrainingfixed volume

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    1-043-CoolingUpAndDown-ModelingScenario
    We consider modeling the attempt of an air conditioner to cool a room to a ``constant'' temperature.

    Keywords: temperatureoscillationNewton's Law of Coolingcoolingthermostatair conditioner

    328

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    BIOME 2021 Scientist Spotlight/Data Nugget Working Group Video Recap
    This two-minute overview video describes the work of the 2021 fall working group for Scientist Spotlight/Data Nugget course resources. Group members began developing new projects for a variety of...

    Keywords: Resources @ Data Nuggetsscientist spotlights

    950

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    Yeti or not: Do they exist?
    Through this 4-part bioinformatics case study, students will be led through the forensic analysis of putative Yeti artifacts based on published findings.

    Keywords: case studybioinformaticsNIBLSEBLAST12S sequencingYeti

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    Introduction to Genome Annotation
    This exercise is an adaptation of the Annotation Lesson by Rosenwald et al. It introduces the use of bioinformatics tools to extract information from genome databases. It is a basic lesson on...

    Keywords: microbiologyGenome annotationBioinformatics EducationBioinformatics and Genomics

    1941

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    IPMpack: an R package for Integral Projection Models
    IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models.

    Keywords: RR-Forgeanimalbiostatisticscomparative analysisecologylongitudinal datamodel comparisonmodel estimationprojectionssurvivaltime seriestrajectoryIPMintegral projection modelsResources @ QUBES - Software

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    Phylogenetic analysis using collections material: interpreting trait evolution by comparison of morphological and molecular genetic hypotheses
    Exercise spans two weeks, includes homework, and involves some groups of animals as well as plants. Emphasizes re-interpretation of morphological trait evolution following molecular genetic...

    Keywords: Evolutionmorphologyphylogenylaboratoryplantsbiological collectionsmolecular analysis

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    1993-Paul_Blanchard-Teaching Differential Equations With a Dynamical Systems Viewpoint
    This is an early discourse on the dynamical system view point of teaching differential equations with a number of rich illustrations.

    Keywords: dynamical systems

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    Microbiome Analysis with Oxford Nanopore 16S amplicon sequencing data
    The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with...

    Keywords: microbiome analysis toolNanopore

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