You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    2014-Chivers-EtAl-Predator-prey systems depend on a prey refuge
    We present an agent-based model which does not require the factors or constraints of previous models to reproduce all six patterns in persistent populations.

    Keywords: Individual & Agent Based Modelingpredator-preythink-pair-shareslynxrefugeprey switchingMustela-Clethrionomys systempatter oriented

    149

    views

    39

    downloads

    0

    comments

    0

    adaptations

    5-002-RelationshipDynamics-ModelingScenario
    The different possible dynamics of a two-person romantic relationship are modeled -- as a linear two dimensional system of equations -- and analyzed.

    Keywords: love affairRomeo and Juliet

    197

    views

    340

    downloads

    0

    comments

    0

    adaptations

    Antigen presentation and cytotoxic T lymphocytes (CTLs): elucidating a common roadblock for students
    Active learning resource for pre-Nursing anatomy and physiology lecture explaining antigen presentation to CTLs and how the CTLs recognize and destroy the pathogen using Biointeractive animations...

    Keywords: Resources @ HHMI - BioInteractiveimmune systemAnatomy & PhysiologyCell communication

    1055

    views

    420

    downloads

    0

    comments

    0

    adaptations

    Draft Version: Energy Balance Models
    This module introduces the student to the process of mathematical modeling.

    Keywords: modulemathematical modelingbenergy balanceclimate modelDIMACSResources @ DIMACSclimatein-class activityResources @ QUBES - Teaching & Referencescienceexperiment

    1304

    views

    243

    downloads

    0

    comments

    0

    adaptations

    R for biologists
    An introductory guide to data analysis in R for life sciences researchers.

    Keywords: R

    1001

    views

    401

    downloads

    0

    comments

    0

    adaptations

    2016-Devaki-Swathi-System of Differential Equations in Prey Predator Model
    Predation relationship exists in ecological niches throughout the world. This is the species interaction which will be mathematically analyzed and embodied in this work.

    Keywords: extinctionCoevolutionpredatorLotka Volterra equationspre

    156

    views

    66

    downloads

    0

    comments

    0

    adaptations

    2015-Joshi-EtAl-Optimal control of an SIR model with changing behavior through an education campaign
    We study stability analysis and use optimal control theory on the system of differential equations to achieve the goal of minimizing the infected population (while minimizing the cost).

    Keywords: SIR modelsvaccinepopulationwater treatmentsusceptibleeducation campaignminimizing costinfected

    123

    views

    56

    downloads

    0

    comments

    0

    adaptations

    2015-Beckmann-Sanchez-Cache Calculus-Modeling Caches through Differential Equations
    We present cache calculus, a technique that models cache behavior as a system of ordinary differential equations, letting standard calculus techniques find simple and accurate solutions of cache...

    Keywords: discretecachecache calculus

    114

    views

    71

    downloads

    0

    comments

    0

    adaptations

    2014-Rogert_Smith-Mathematical Modeling of Zombies
    Here, we use diffusion to model the zombie population shuffling randomly over a one-dimensional domain.

    Keywords: kineticsZombiezombificationinteraction times

    125

    views

    66

    downloads

    0

    comments

    0

    adaptations

    2014-Niemann-Miklos-Simple Method for Estimation of Parameters in First Order Systems
    A simple method for estimation of parameters in first order systems with time delays is presented in this paper.

    Keywords: delaytime delystep response

    89

    views

    50

    downloads

    0

    comments

    0

    adaptations

    2012-Yuan_Yuan-A coupled plankton system with instantaneous and delayed predation
    We present two simple plankton population models: one has instantaneous predation, another has delayed predation.

    Keywords: phytoplanktonbifurcationorbitsherbivorous zooplanktoneffect of fishmaturation time delay

    114

    views

    35

    downloads

    0

    comments

    0

    adaptations

    1977-HI_Freedman-P_Whitman-Mathematical models of population interactions with dispersal
    A system of differential equations is proposed as a model of dispersion between two populations in habitats separated by a barrier.

    Keywords: predatorbarriertwo populationstwo habitats

    96

    views

    31

    downloads

    0

    comments

    0

    adaptations

    1988-Michael Intriligator-Dagobert Brito-A Predator-Prey Model of Guerrilla Warfare
    The authors present a three variable: numbers of guerrillas, numbers of regular (government) soldiers, and size of population controlled by the guerrillas, at time t), nonlinear system of three...

    Keywords: combat modelguerrilla warfaregovernment

    137

    views

    49

    downloads

    0

    comments

    0

    adaptations

    7-011-CoupledSystemLaplace-ModelingScenario
    Differential equations and Laplace transforms are an integral part of control problems in engineering systems. We consider a baby warming device.

    Keywords: transfer functionpolycarbonatebaby heatercoupled systemheating

    349

    views

    216

    downloads

    0

    comments

    0

    adaptations

    5-012-LinearSystemConjecture-TechniqueNarrative
    Students go from the solution for y'(t) = k*y(t) to a natural extension to the solution conjecture of a system of two constant coefficient, homogeneous, linear differential equations introducing...

    Keywords: discovery learningconjecturesolutionsubstitution

    376

    views

    130

    downloads

    0

    comments

    0

    adaptations

    1-039-StochasticPopModels-ModelingScenario
    We develop strategies for creating a population model using some simple probabilistic assumptions. These assumptions lead to a system of differential equations for the probability that a system is...

    Keywords: Probabilitypopulation dynamicsVarianceMeanstochasticdeterministic

    353

    views

    129

    downloads

    0

    comments

    0

    adaptations

    3-031-SpringCost-ModelingScenario
    We assume students are familiar with overdamping and underdamping of a spring-mass-dashpot system. Students will apply this knowledge to model the interplay between spring constant, tolerance, and...

    Keywords: designunit costspring constantstatic equilibriumspring masss dashpot

    192

    views

    118

    downloads

    0

    comments

    0

    adaptations

    3-072-EarthQuakePartI-ModelingScenario
    This modeling scenario considers a one-story building as a simple structure; the roof is modeled as a single point mass. Movement of the roof can be modeled similar to a mass-spring system.

    Keywords: earthquakevibrationamplituderesonanceundampedspring-mass system

    200

    views

    289

    downloads

    0

    comments

    0

    adaptations

    6-075-LorenzSystemSimulation-ModelingScenario
    The Lorenz system is examined by students as a simple model of chaotic behavior or strange attractor. MATLAB code is created to find the numerical solutions of the Lorenz’ system of nonlinear...

    Keywords: chaososcillatorLorenzwaterwheelstrange attractorbifurcation effect

    172

    views

    183

    downloads

    0

    comments

    0

    adaptations

    A Critical Guide to Unix
    This Critical Guide in the Introduction to Bioinformatics series briefly introduces the Unix Operating System, and provides a subset of some of the most helpful and commonly used commands....

    Keywords: NIBLSEUNIXbasic UNIX commandsGOBLETInstructorResources

    892

    views

    240

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search