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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Understanding Fish Habitat Selection Using Snorkel Surveys
    Identifying the habitat selection patterns of aquatic species is necessary for protecting threatened and endangered native fishes, as well as for producing satisfying and exciting sport fisheries....

    Keywords: fishfisheriesstreamshabitatRiver Field Studies NetworkResource Selection

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    Using Map of Life to Investigate Species Ranges Shifts with Climate Change
    Biodiversity databases, based on species occurrences, are now readily available for students to use a free of charge. These databases allow exploration of how species ranges shift through time. One...

    Keywords: climate changehabitat suitabilityspecies distributionMap of Lifethermal tolerance

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    2009-Brian_Winkel-Modelling_Growth_Of_an_OilSlick
    An oil-slick spreads at sea. From time to time, but irregularly, a helicopter is dispatched. On each trip, it arrives over the slick, the pilot takes a picture, waits 10 minutes, takes another, and...

    Keywords: differential equationssimulationparameter estimationdifference equation

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    Field sketching, geomorphic data, and the power of perspective
    Sketching is a powerful tool to capture observations about the landscape and preserve a picture of a field site at a particular time. At the same time, our perspectives, be they disciplinary,...

    Keywords: sketchingstream dischargedata collectionGeomorphologyRiver Field Studies Networkgrain sizeperspective

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    1-059-ContainerShapeFallingWater-ModelingScenario
    We examine many different physical situations to determine the time it takes a fixed volume of water to flow out of different shape containers through the same size exit hole at the bottom of the...

    Keywords: containersTorricelli's Lawshapedischarge coefficient

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    1-115-ModelingWithFirstOrderODEs-ModelingScenario
    Several models using first order differential equations are offered with some questions on formulating a differential equations model with solutions provided.

    Keywords: bacteriafalling objectNewton's Law of Coolingdrugcoolingdrag

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    6-028-SaltCompartments-ModelingScenario
    Model a phenomena in which salt mixtures from two tanks are mixed with changing volumes of water.

    Keywords: concentrationcomparmentsalttankmixing

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    Why are Cells Small? Surface Area to Volume Ratio
    This module explores surface area to volume ratios in a cube and sphere in relation to cell size.

    Keywords: introductory biologygraphingRatiosOpenStaxqbccmanipulate equationsCellular and Molecular BiologyUse elementary functionsCreate graphsInterpret graphsRates and ProportionsSolving Equations and Inequalitiesinterpret tables

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    Using Data Science Skills and Digitized Natural History Collections Data to Investigate Ecological and Evolutionary Principles in Introductory Biology Courses
    Session presentation Biodiversity Literacy in Undergraduate Education project at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: data sciencenatural history collections2019 QUBES/BioQUEST Summer WorkshopBLUEdigitized natural history collections

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    Processes that Regulate Patterns of Species and Genetic Diversity
    This activity was developed for an undergraduate upper level ecology course for Environmental or Biological Science majors. Classes of ~20 students work best for the activity.
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    Measuring the Health of the Earth Using the Theory of Island Biography
    This module uses a variety of available datasets to explore methods of calculating biodiversity and measuring landscape as well as the relationship between those.

    Keywords: moduleEvolutionecologycollege algebraearth scienceOceanographygeophysicalResources @ DIMACSResources @ QUBES - Teaching & Reference

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    Data from: Advancing population ecology with integral projection models: a practical guide
    Review important resources for building IPMs and provide a comprehensive guide, with extensive R code, for their construction.

    Keywords: IPMintegral projection modelsdemographyelasticitylife historymatrix projection modelpopulation growth ratepopulation projection modelsensitivitystage structurevital ratesResources @ DryadResources @ QUBES - Data

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    Advancing population ecology with integral projection models: a practical guide
    Integral projection models (IPMs) use information on how an individual's state influences its vital rates – survival, growth and reproduction – to make population projections using regression...

    Keywords: IPMintegral projection modelspopulation growthreviewsdemographyelasticitylife historymatrix projection modelpopulation growth ratesensitivitystage structurevital ratesregressionResources @ QUBES - Teaching & Referencecovariatesanalytics

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    Phenotypic plasticity and predation
    Students predict changes to tadpole morphology and coloration after considering characteristics of the predator species and the prey themselves then test their own hypotheses (typically with...

    Keywords: RExcelimage analysisgraphingt-testsfrequency histogramsdata visualizationANOVAhypothesis formulationpredator-prey interactionsphenotypic plasticity

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    Leaf cutter ant foraging
    This module introduces students to leaf-cutter ants in the rainforests of Panama. Students derive their own research hypotheses regarding ant foraging or allometric scaling relationships.

    Keywords: leaf cutter antsforagingallometrylinear regressiongraphingdata visualizationResources @ AIMSbody size

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    Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses
    Our understanding of microbiomes, or the collection of microorganisms and their genes in a given environment, has been revolutionized by technological and computational advances. However, many...

    Keywords: microbiomeDNA SubwayCyVerseCourse based undergraduate researchQIIME2ranacapa

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    Tying it All Together: An Activity to Help Students Connect Course Experiences to Posted Learning Outcomes
    Instructors of undergraduate courses in Biology and other Science, Technology, Engineering, and Mathematics (STEM) disciplines face an ongoing challenge to foster higher-order thinking and learning...

    Keywords: metacognitionreflectiongoalsOutcomes

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    Calling Bullshit DCS 105 Bates College RByte Worksheets
    These are handout worksheets for your in-class RByte activities.

    Keywords: RActivityGoogle CoLabCalling BullshitRByteData PracticeCoding SkillsSkill development

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    Introduction to Plant Phenology with Museum Specimens of Desert Prickly Pear (Opuntia phaeacantha)
    Students engage in hands-on exploration of phenology by working with digitized herbarium specimens, particularly focusing on prickly pear specimens from the UTEP herbarium. They learn to identify...

    Keywords: botanyclimate changephenologyherbariumcactus

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    Using Aquatic Macroinvertebrates in Stream Bioassessment
    Bioassessment is an evaluation of the biological condition of a waterbody using biological surveys and other direct measurements of resident living organisms. Aquatic macroinvertebrates are...

    Keywords: toleranceMacroinvertebratesRiver Field Studies Networkbioindicatorbioassessmentstream health

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