You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Using Dotplots for Comparative Genomic Analysis
    In this activity, students are introduced to dotplots as a tool for analyzing phage genomic similarity.
    1201

    views

    1051

    downloads

    3

    comments

    0

    adaptations

    Introduction to Phylogenetic Trees for Comparative Genomic Analysis
    In this activity, students are introduced to phylogenetic trees and networks as tools for analyzing evolutionary relationships.
    1660

    views

    2127

    downloads

    2

    comments

    0

    adaptations

    Introducing PHAGES Students to Primary Literature
    The ‘Introducing PHAGES Students to Primary Literature’ set of teaching resources offers faculty 2 distinct sets of teaching resources for introducing students to scientific literature in the...
    1255

    views

    1659

    downloads

    0

    comments

    0

    adaptations

    Exploring Functions for Common Phage Proteins
    This resource is designed to help students better understand the functions of common structural and enzymatic phage proteins, and to relate these functions to phage structure using electron...
    1108

    views

    1776

    downloads

    0

    comments

    0

    adaptations

    Student and Faculty Tools for Generating High-Quality Phage Annotations
    Phage genome annotation requires collaboration between faculty and their student research team. This set of resources provides tools to assist both students and faculty in the evaluation and...
    1054

    views

    929

    downloads

    0

    comments

    0

    adaptations

    A Letter to a Young Scientist: Prompting Students To Reflect On And Recognize Their Own Growth As Scientists
    This activity is designed to prompt students to reflect on and recognize their own growth as scientists and, consequently, may help develop student self-efficacy and science identity.
    952

    views

    193

    downloads

    1

    comments

    0

    adaptations

    Elevator Pitch: An Activity to Help Students Communicate Their Research
    In this activity, students and the research mentor co-develop an elevator pitch that students can use to communicate their research.
    668

    views

    157

    downloads

    0

    comments

    0

    adaptations

    5Qs: An Activity to Support Students Develop Skills to Interpret Research Observations
    5Qs (five questions) is a simple pedagogy tool research mentors can use to help students think through their observations systematically, to draw supported conclusions, and to decide on next steps,...

    Keywords: researchMentorshipambiguitymodelling scientific thinkingencouraging independence

    1033

    views

    204

    downloads

    1

    comments

    0

    adaptations

    Understanding Gene Prediction Programs
    Introduces students to the key biological concepts underlying computational gene prediction. Outcomes include ability to analyze and evaluate output of gene prediction programs, and reflect on...

    Keywords: Genome annotationSEA-PHAGESgene predictiongenemarkcoding potentialcodon biassix frame translation

    1138

    views

    1166

    downloads

    2

    comments

    0

    adaptations

    Exploring Phage Immunity Systems with a Scientific Reading and Communication Activity
    This jigsaw assignment is designed to increase students’ understanding of phage immunity systems, through reading primary literature and communicating key aspects.
    820

    views

    289

    downloads

    0

    comments

    0

    adaptations

    Exploring Fundamental Concepts of Phage Immunity Systems: A jigsaw activity
    This jigsaw assignment is designed to increase students’ understanding of phage immunity systems
    826

    views

    440

    downloads

    0

    comments

    0

    adaptations

    Phage Discovery Videos
    A compilation of videos to support teaching the concepts and protocols for discovering and working with phage.
    1056

    views

    283

    downloads

    0

    comments

    0

    adaptations

    Conservation and ethics of using synthetic genetics
    This contains teaching material - powerpoints and handouts that can be adapted for lectures and/or discussion groups.
    1229

    views

    897

    downloads

    0

    comments

    0

    adaptations

    The ADW: a database of animal natural history that supports complex, authentic student inquiry.
    Poster on the Animal Diversity Web and Quaardvark presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: animal diversityundergraduate researchnatural historyAnimal Diversity Web

    1140

    views

    205

    downloads

    0

    comments

    0

    adaptations

    HHMI SEA-PHAGES and GENES: Course-based UREs Designed for All
    The HHMI Science Education Alliance (SEA) program supports a community of faculty members and institutions embed research as a fundamental component of early undergraduate science curricula.

    Keywords: course-based research experiences (CUREs)SEA-PHAGES

    1355

    views

    259

    downloads

    0

    comments

    0

    adaptations

    Traditional Ecological Knowledge and Conservation
    Traditional Ecological Knowledge (TEK) is based on deep understanding of systems from observations made over hundreds to thousands of years. This resource connects TEK to modern conservation...

    Keywords: climate changeenvironmental justiceTraditional ecological knowledge

    1926

    views

    1625

    downloads

    0

    comments

    0

    adaptations

    Data management and introduction to QGIS and RStudio for spatial analysis
    Students learn about the importance of good data management and begin to explore QGIS and RStudio for spatial analysis purposes. Students will explore National Land Cover Database raster data and...

    Keywords: tool:rstudioGISdata managementlandscape ecologyGeospatial ScienceNational Ecological Observatory Networkquantitative inquiryQGIS

    1979

    views

    1261

    downloads

    0

    comments

    0

    adaptations

    Following the Data
    The video and exercise provides insight into how researchers are using digital data resources to investigate biodiversity in prairie fen wetlands.

    Keywords: data in the classroomprocess of sciencebiodiversity informatics

    3053

    views

    943

    downloads

    0

    comments

    1

    adaptations

    Diving into Deep Sea Data
    A module that combines NOAA's Okeanos Explorer and the iDigBio Portal to explore the deep sea!

    Keywords: Querying databasesremote sensingnatural history collectionsfishesscientific name5ESpeciesichthyologydeep sea

    1224

    views

    690

    downloads

    0

    comments

    0

    adaptations

    Following the Data - PowerPoint Addition to Module
    This PowerPoint presentation guides instructors and students through the key background information for the module.
    1072

    views

    441

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search