You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Plant-microbial mutualisms in canopy gap recovery: How do soil microbial symbionts help tropical forests recover from treefall gaps?
    This module uses tropical plant-soil microbial interactions in canopy gaps as a lens to better understand species interactions and disturbance ecology, while showing how scientists study these...

    Keywords: forest ecologyPlant Ecologynutrient cyclingmicrobestropical forestsDisturbances

    276

    views

    73

    downloads

    0

    comments

    0

    adaptations

    NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey
    Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination...

    Keywords: RRStudioCommunity EcologyBioinformatics Educationbiodiversity informaticsNMDSfungiordination

    1611

    views

    1143

    downloads

    0

    comments

    0

    adaptations

    Implementing an online module on microbe-plant interactions in the context of ecological disturbance for Microbiology and Biochemistry courses in India
    This module explores tropical forest gap dynamics and helps students develop hypotheses about climate-related changes in plant-microbial interactions and was implemented in Microbiology and...

    Keywords: data analysisscientific methoddata interpretationdisturbance ecologyexperiential learningCarbon sequestration in tropical rainforestPlant Microbial interactionsCanopy GapUndergraduate MicrobiologyNational Education Policy 2020

    426

    views

    93

    downloads

    0

    comments

    0

    adaptations

    BEIC - Creation of the Biology Educator/Researcher Cross-Segment Collective (RCN-UBE Introduction)
    The Biology Education Intersegmental Collaborative aids faculty learning communities consisting of 2- and 4-year partners to improve community college and transfer student outcomes. BEIC supports...

    Keywords: RCN-UBE Introduction

    312

    views

    143

    downloads

    0

    comments

    0

    adaptations

    Molecular Basis of Sickle Cell Disease
    This multi part case on hemoglobin structure as it relates to oxygen binding and sickle cell disease focuses on utilizing bioinformatics and molecular visualization tools to learn about the sickle...

    Keywords: Hemoglobinmolecular visualization and analysisintroductory bioinformaticssickle cell diseasePDBMolecular Case Studyoxygen bindingmyoglobinmolecular literacy3D protein structuresstructural representations

    1698

    views

    1981

    downloads

    0

    comments

    0

    adaptations

    Exploring the Ecology of Gorongosa
    Students learn about bottleneck events, population demographics and growth, ecological niches and competition, food chains/webs and ecological disturbances through past and current data on...

    Keywords: Community Ecologypopulation ecology

    1904

    views

    3259

    downloads

    0

    comments

    0

    adaptations

    Using Open-Source Bioinformatics and Visualization Tools to Explore the Structure and Function of SARS-CoV-2 Spike Protein
    The relationship between protein structure and function is a foundational concept in undergraduate biochemistry. We find this theme is best presented with assignments that encourage exploration and...

    Keywords: bioinformaticsmolecular modelingCOVID19protein structure and functionUCSF ChimeraSARS-CoV-2 spike proteinACE2 receptor

    3538

    views

    380

    downloads

    0

    comments

    0

    adaptations

    Mice, Acorns, and Lyme Disease: a Case Study to Teach the Ecology of Emerging Infectious Diseases.
    Ebola, Zika, the recall of contaminated lettuce - these are just a few recent outbreaks making headlines. Students should be able to connect what they learn in their biology courses to explain...

    Keywords: epidemiologyEcological changeInfectious disease ecologyReservoirsTransmission cycle

    1226

    views

    348

    downloads

    0

    comments

    0

    adaptations

    Understanding the Importance of Microtubules in Normal Cell Division: Chemotherapy Connection
    In introductory courses, students learn about microtubules as important structures but may not engage in a hands-on experience to localize microtubules themselves or to learn about their connection...

    Keywords: cancerCell DivisionimmunofluorescenceMicrotubulesAntibodies

    965

    views

    61

    downloads

    0

    comments

    0

    adaptations

    Healing the scars: A tropical rainforest carbon cycling module implemented in a Systematic Botany course focused on the Brazilian Caatinga flora
    This resource describes my experience in implementing this OCELOTS module on tropical rainforest carbon cycling in a Systematic Botany course for undergraduate majors in Biology at Pernambuco...

    Keywords: carbon cyclePlant systematicsCaatingaTropical trees

    241

    views

    114

    downloads

    0

    comments

    0

    adaptations

    How many critters can an island hold? Using digitized natural history collections to test real hypotheses about island biogeography
    Use digitized natural history specimen data from the Alexander Archipelago in Alaska to explore hypotheses about island biogeography. Reprinted from Proceedings of the Association for Biology...

    Keywords: Island biogeographyArctosdigitized natural history collectionsdigital data

    902

    views

    353

    downloads

    0

    comments

    0

    adaptations

    OCELOTS - A Network for Facilitating Online Content for Experiential Learning of Tropical Systems (RCN-UBE Introduction)
    The OCELOTS Network connects tropical biology researchers with specialists in pedagogy, 4DEE, software, and media to create and implement research-based online modules in tropical biology,...

    Keywords: RCN-UBE Introduction

    300

    views

    132

    downloads

    0

    comments

    0

    adaptations

    Environmental Drivers of Ecosystem Carbon Fluxes from Minutes to Years
    Students build on fundamental concepts of ecosystem production and carbon cycling, combining this knowledge with open long-term data from ecological and meteorological networks to uncover the...

    Keywords: climate changecarbonPlant EcologyBiogeochemistryResource Typecarbon cyclingproductivitynet ecosystem productiongross primary productionecosystem respirationcarbon fluxes

    3633

    views

    1775

    downloads

    0

    comments

    0

    adaptations

    Causes and consequences of resisting herbivory: How long-lived plants avoid damage from diverse short-lived insect herbivores
    This module guides students through decades-long studies of tropical plant-insect interactions to elucidate the ecology and evolution of plant defenses while encouraging students to consider the...
    844

    views

    69

    downloads

    0

    comments

    0

    adaptations

    Facilitating Scientific Literacy Through Writing: A Write-to-Learn Assignment for Large Introductory Undergraduate Biology Courses
    Write-to-learn (WTL) assignments have been used in a variety of disciplines to encourage conceptual learning and critical thinking in undergraduate education. These assignments focus on...

    Keywords: geneticsEvolutionecologyCellsPlants form and functionAnimals form and function

    1128

    views

    154

    downloads

    0

    comments

    0

    adaptations

    Modeling Strep Throat Detection, Infection, and Spread Using an SIR Model and the Vensim Simulation Software
    The overarching goal of this lesson is to provide students with an opportunity to gain experience making and using biological models. Biological modeling can be used to investigate complex,...

    Keywords: infectious diseasebiological modelingSIR model

    1403

    views

    199

    downloads

    0

    comments

    0

    adaptations

    Casting a Wide Net via Case Studies: Educating across the undergraduate to medical school continuum in the biological sciences
    This article seeks to help bridge undergraduate and medical educators by describing shared educational goals and strategies, highlighting resources relevant for both groups, and exemplifying shared...

    Keywords: genetic testingdirect-to-consumer genetic testinginformed consentprenatal screeningsecondary findingswhole genome sequencing

    928

    views

    121

    downloads

    0

    comments

    0

    adaptations

    Using a Primary Cell Culture Model to Study the Neural Extracellular Matrix
    The extracellular matrix (ECM) provides structural support to cells, but also has key roles in mediating cell adhesion, cell signaling, and differentiation. While this topic is discussed in the...

    Keywords: Neural extracellular matrixPerineuronal netPrimary neuronal culture

    1134

    views

    274

    downloads

    0

    comments

    0

    adaptations

    SNAPSHOT SERENGETI: Analyzing Wildlife Ecological Relationships in an upper-level Ecology course
    Two assignments were created to develop skills in ecological hypothesis testing, data analysis and interpretation using the Snapshot Serengeti and Gorongosa camera trap data and graphical...

    Keywords: hypothesis testinggraphical analysis and interpretationsavannah biomeecological relationshipscompare and contrast to primary literature

    238

    views

    124

    downloads

    0

    comments

    0

    adaptations

    Promoting Interleaved and Spaced Practice in Anatomy and Physiology Students
    Students' academic performance in college can be impacted by varying background experiences and skill levels. This article describes a lesson designed for undergraduate Anatomy and Physiology...

    Keywords: Anatomical Terms and DirectionInterleaved PracticeStudy StrategiesSpaced Practice

    402

    views

    46

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search