You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Rescuing Data: Preserving Data for the Future
    Meet Diane Srivastava, director of the Canadian Institute for Ecology and Evolution, and learn how they sythesize and save biodiversity data.

    Keywords: metadatadigital datadata skillsBiodiversity Science

    339

    views

    127

    downloads

    0

    comments

    0

    adaptations

    BSURP Guided goal-setting workshop for undergraduate researchers
    Lesson plan, slides, and worksheet for a guided research goal-setting workshop. Designed for undergraduates in the Stanford Biology Summer Undergraduate Research Program (BSURP).

    Keywords: undergraduate researchworkshopsgoalsbioBUDS

    251

    views

    108

    downloads

    0

    comments

    0

    adaptations

    Guided Goal Setting for Mentors and Mentees
    We provide a framework for research mentors and mentees to talk together and explicitly discuss expectations, assumptions, and goals for each party.

    Keywords: Undergraduate Mentorshipstudent mentoring and traininggoals

    327

    views

    78

    downloads

    0

    comments

    0

    adaptations

    Mini-Workshop August 14, 2020
    We reviewed the materials available on Genome Solver (other lessons here) and described our new python pipeline for examining horizontal gene transfer and a new synteny lesson in detail.

    Keywords: Bioinformatics Education

    1201

    views

    1901

    downloads

    0

    comments

    0

    adaptations

    Additional Figures of the Day - Parasitology
    These additional figures were used in a Parasitology course (juniors and seniors) at Radford University.

    Keywords: graphsmath attitudesResources @ BIOMAAPInterpreting Graphs

    1477

    views

    360

    downloads

    0

    comments

    0

    adaptations

    Adaptation and Facilitation of Small Group Activities in an Online Introductory Biology Class
    In spring 2020, the sudden mid-semester closure of my campus in response to the global COVID-19 pandemic necessitated a rapid transition to emergency online learning. Consequently, I adapted the...

    Keywords: Cellular communicationNeuronal functionNeuronal structure

    1137

    views

    129

    downloads

    0

    comments

    0

    adaptations

    Using Bioinformatics and Molecular Visualization to Develop Student Hypotheses in a Malate Dehydrogenase Oriented CURE
    Developing student creativity and ability to develop a testable hypothesis represents a significant challenge in most laboratory courses. This lesson demonstrates how students use facets of...

    Keywords: bioinformaticsNoncovalent InteractionsEnzyme CatalysisProtein Structure/function

    3872

    views

    598

    downloads

    0

    comments

    0

    adaptations

    2006-Chaachoua-Saglam-Modelling by differential equations
    This paper aims to show the close relation between physics and mathematics taking into account especially the theory of differential equations.

    Keywords: historyseventeenth century

    101

    views

    35

    downloads

    0

    comments

    0

    adaptations

    Coding Club: A Positive Peer-Learning Community
    Free and self-paced tutorials and courses for learning to code out of the University of Edinburgh

    Keywords: statisticsRecologydata visualizationcodingenvironmental sciencepythonjavascript

    1462

    views

    201

    downloads

    0

    comments

    0

    adaptations

    Using Raw Sequence Data to Analyze Tumor Suppressor Mutations
    Learning to identify DNA sequence variants from raw sequencing data (electropherograms) is a basic molecular biology skill with applications to basic research and clinical practice. Yet learning to...

    Keywords: bioinformaticsmutationDNAgenomic visualizationparts of a geneclinical consequencesraw data

    278

    views

    19

    downloads

    0

    comments

    0

    adaptations

    1-144-HeatCool-ModelingScenario
    We offer an opportunity to build a mathematical model using Newton's Law of Cooling for a closed plastic baggie of liquid inside a liquid container.

    Keywords: temperatureNewton's Law of Coolingcooling

    96

    views

    32

    downloads

    0

    comments

    0

    adaptations

    The Education for Sustainability – Philly Project: Supporting Teachers to Develop Lessons on Sustainability
    Talk given as a part of the Symposium - Communities of Practice for Math Modeling Education at the SIAM 2018 Conference

    Keywords: SIAMsustainabilityResources @ MMHubResources @ SIAMEd 2018

    1373

    views

    366

    downloads

    0

    comments

    0

    adaptations

    QUBES: Supporting faculty in the teaching of mathematical biology
    Abstract for a presentation that was part of a minisymposium at SMB 2015.

    Keywords: QUBESfaculty mentoring networksmentoring

    1214

    views

    185

    downloads

    0

    comments

    0

    adaptations

    Snail Races: An Inquiry-Based Approach to Learn Invasive Species Ecology
    Inquiry-based lessons allow learning that is hands-on and student-driven, fostering engagement and retention of knowledge in any discipline. Here, we use this learning framework to engage students...

    Keywords: ecologyenvironmentInvasive SpeciesScience CommunicationScientific InquiryDispersal

    1589

    views

    91

    downloads

    0

    comments

    0

    adaptations

    From Dirt to Streptomyces DNA
    The purpose of this semester-long Lesson is to give students an authentic, course-based undergraduate research experience during which they learn basic and advanced microbiological and molecular...

    Keywords: MetabolismAntibiotic productionrRNA genesSecondary metabolitesStreptomyces

    2148

    views

    451

    downloads

    0

    comments

    0

    adaptations

    Geoscience Methods and Resources for K-5 Pre-Education Majors
    : Exploring Geoscience Methods was an excellent capstone experience for Elementary Education Majors. The class I used this module with was 24 students of various backgrounds and academic...

    Keywords: geneticsvideosQUBESecologyResources @ HHMI - BioInteractiveMathematical Biologycalculusjavaorganismal biologyquantitative biologybioinformaticsneurosciencegenomicscancerSecondaryyoutubemicrobiomeFaculty Mentoring NetworksalamanderCapture mark-recaptureAudience level - Introductory UG - majorsAudience level - Introductory UG - non-majorsecosystemsgenetic basis of diseasebiology of cellshuman reproductionfood chainIntroduction to Modelingrandom number generatorPost-secondaryLower DivisionPossible TasksModeling ProjectBuildCompareEvaluateexponential decayrecursionabsorptionelimination

    1621

    views

    2142

    downloads

    0

    comments

    0

    adaptations

    Learning the Landscape: An Active and Applied Lesson on Landscape Ecology for General Ecology Courses
    Landscape ecology is an important subtopic of ecology. As a field, it is inherently interdisciplinary and provides opportunities to teach not only content, but transferable ecological and...

    Keywords: landscape ecologyspatial scaleecosystem managementHabitat fragmentation

    594

    views

    12

    downloads

    0

    comments

    0

    adaptations

    Mysterious Occurrences: Representation, Resiliency, and Redundancy in Native Plant Populations
    Meet Dr. Rachel Hackett, a conservation plant biologist at the Michigan Natural Features Inventory.  We learn about Rachel's job and the restoration of threatened and endangered species. Rachel...

    Keywords: digital resourcesendangered speciesconservation sciencePlant Resilienceplant biodiversitydata skills

    205

    views

    44

    downloads

    0

    comments

    0

    adaptations

    bioBUDS: How to Read a Paper
    Undergraduates are often expected to read scientific papers for class and submit assignments based on their understanding of the contents of these papers. Most courses, in our experience as...

    Keywords: Reading Scientific PapersInterpreting Figures

    261

    views

    80

    downloads

    0

    comments

    0

    adaptations

    Application of a Bacterial Experimental Evolution System to Visualize and Teach Evolution in Action: A Course-Based Undergraduate Research Experience
    Concepts of evolution are typically taught through examples of extremely long timescales, which do not always resonate broadly. Here, we describe a course-based undergraduate research experience...

    Keywords: EvolutionmutationcompetitionNatural Selectionregulationstructure and functionreproductive fitnessgenotype to phenotypehomologs

    3103

    views

    249

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search