You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Lesson V - Phylogenetics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

    1607

    views

    2176

    downloads

    0

    comments

    2

    adaptations

    Fitzhugh-Nagumo Model
    The FitzHugh–Nagumo model describes a prototype of an excitable system (e.g., a neuron).

    Keywords: differential equationsmathematical modeldifferential equation modelordinary differential equation modelneuroscienceexcitable

    1188

    views

    221

    downloads

    0

    comments

    0

    adaptations

    Tools: New tools for new science
    A collection of computational, modeling and data analysis tools developed at Microsoft Research Labs.

    Keywords: modelingdata analysisdatacomputational toolsdata visualization

    954

    views

    193

    downloads

    0

    comments

    0

    adaptations

    SUMS4Bio - Video tutorials in math and stats for biology students
    Links to videos and pdf tutorials for core mathematical and statistical concepts used in biology

    Keywords: Probabilitystatisticsmathematicsvideoschi-squaredExcelBar Graphsline graphsScatter Plotsp-valuest-testsExponentsLogarithmsproportionsRatiosbinomialdata typessummary statisticsfrequency histogramsResources @ SUMS4BioPresentation

    1488

    views

    213

    downloads

    0

    comments

    0

    adaptations

    QUBES: Building a community to promote undergraduate quantitative biology education
    Poster on the QUBES project presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: QUBESfaculty mentoring networkscommunitySummer Workshop 2018

    1610

    views

    291

    downloads

    0

    comments

    0

    adaptations

    2012-Rusinko-Swan-Agent-Based Fabric Modeling Using Differential Equations
    We use an agent-based modeling software, NetLogo, to simulate fabric drape by applying a modified mass spring system.

    Keywords: NetLogospring massagent-baseddrapingyarnfabric

    123

    views

    42

    downloads

    0

    comments

    0

    adaptations

    3-076-CircuitBuilding-ModelingScenario
    In this project students will establish a mathematical model for an electric circuit as a second-order ordinary differential equation with constant coefficients.

    Keywords: simulationexperimentMultisimcircuitinductancecapacitorKirchhoff's Voltage Lawresistor

    202

    views

    409

    downloads

    0

    comments

    0

    adaptations

    6-011-HumansVsZombies-ModelingScenario
    Students analyze the SIR differential equations model in the context of a zombie invasion of a human population. Students analyze a two equation system representing only two populations, humans...

    Keywords: zombiesinfectionSIR models

    255

    views

    142

    downloads

    0

    comments

    0

    adaptations

    6-065-InternetPlatformUsers-ModelingScenario
    A model estimating the volume of users interacting through a two-sided Internet platform (allowing interaction of two types of users) will teach students how to analyze a 2-dimensional dynamical...

    Keywords: dynamicsflowconservedfixed pointscycletinternet platformdiverghenceJacobianattractingrepellingnodesstablesaddlespiral

    222

    views

    352

    downloads

    0

    comments

    0

    adaptations

    Using Digitized Collections-Based Data in Research: A Hands-On Crash Course in Ecological Niche Modeling
    Step-by-step, hands-on instruction on ways to access and download these specimen data, how to process climate layer data, and how to apply Maxent software to construct ecological niche models.

    Keywords: ecology labbiodiversity informaticsnatural history collectionsMicrosoft Excelbiodiversity collectionsRstatsecological niche modelingQGISENMToolsMaxent

    1971

    views

    573

    downloads

    0

    comments

    0

    adaptations

    3D breast cancer tissue reconstruction
    This module allows students to follow a researcher as she discovers new features of breast cancer tissue architecture, using 3D reconstructions of histological specimens.

    Keywords: graphingdata visualizationbreast cancerDCIShistogramscentroidsums of squares

    2171

    views

    1649

    downloads

    0

    comments

    0

    adaptations

    Painting turtles: an introduction to species distribution modeling in R
    This module uses R software to introduce students to the process of accessing databases and building species distribution models based on occurrence records.

    Keywords: RResources @ ESA - TIEEfmnDIGspecies distributionshabitat suitabilitycooperative learningjigsaw

    3093

    views

    922

    downloads

    0

    comments

    0

    adaptations

    Developing Open Source Plugins for the Educational Gateway QUBEShub: Expanding Community Reach and Building a Robust Open Education Resource Ecosystem
    We present work on development of (1) a component to record, track and display the multitude of partners and professional organizations involved in the QUBES mission, and (2) a component to bring...

    Keywords: OERscience gatewaysgateways17

    1204

    views

    178

    downloads

    0

    comments

    0

    adaptations

    Exploration of the Human Genome by Investigation of Personalized SNPs
    Students often shy away from tedious bioinformatics approaches to exploring their genomes. However, in our expanding digital world these skills are some of the most relevant and valuable. To...

    Keywords: UCSC genome browsersingle nucleotide polymorphismGenome wide association studiesGenomic organization

    1873

    views

    839

    downloads

    0

    comments

    0

    adaptations

    Squirreling Around for Science: Observing Sciurid Rodents to Investigate Animal Behavior
    Hands-on research experiences are important opportunities for students to learn about the nature of inquiry and gain confidence in solving problems. Here, we present an inquiry-based lesson plan...

    Keywords: foragingbehaviorbehavioral ecologySciuridSquirrelSquirrel-NetTrade-offVigilance

    2723

    views

    968

    downloads

    0

    comments

    0

    adaptations

    Promoting Climate Change Literacy for Non-majors: Implementation of an atmospheric carbon dioxide modeling activity as an inquiry-based classroom activity
    Students who are directly involved in scientific activities develop a deeper understanding and appreciation of both scientific knowledge and the scientific process. This understanding is critically...

    Keywords: modelingExcelquantitativeclimate changeEnvironmental Biologyatmospheric carbon dioxide

    1424

    views

    286

    downloads

    0

    comments

    0

    adaptations

    Out of Your Seat and on Your Feet! An adaptable course-based research project in plant ecology for advanced students
    University capstone projects can offer science students a rich research experience that illustrates the process of doing scientific research, and can also help students better choose future...

    Keywords: statisticsactive learningecologyinterdisciplinaryplantscommunicating sciencegroup workfield workproces of science

    1677

    views

    462

    downloads

    0

    comments

    0

    adaptations

    2010-Kar-Chakraborty-Bioeconomic_modelling_of_a_prey_predator_system_using_differential_algebraic_equations
    We propose a biological economic model based on prey-predator dynamics where the prey species are continuously harvested and predation is considered with type II functional response.

    Keywords: economicsbifurcationharvestfisheryequilibriumdifferential algebraic equation

    135

    views

    33

    downloads

    0

    comments

    0

    adaptations

    2020-TeachingModule-SpreadOfCommonColdSimulation
    This simulation is meant to introduce the idea of a differential equation model and investigate the impact of heightened hygiene and decreased interactions on the spread of an infectious disease....

    Keywords: simulationmoduleinfectious diseasediseasespreadTeaching Modulespread of disease

    238

    views

    678

    downloads

    0

    comments

    0

    adaptations

    3-130-MatterOfSomeGravity-ModelingScenario
    This project introduces the concept of an inverse problem (or parameter estimation), in the context of the simple linearized pendulum ordinary differential equation.

    Keywords: gravityinverse problemacceleration

    231

    views

    147

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search