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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Using Zebrafish in a Developmental Biology Lab Course to Explore Interactions Between Development and the Environment
    Important learning outcomes for biology students include the ability to develop experiments as well as pull together concepts across their coursework. The field of developmental biology, especially...

    Keywords: toxicologymorphogenesisorganogenesis

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    Active Learning: Developing Self-Directed Learners Through Strong Intellectual Engagement
    When they were students, many current science instructors learned through traditional lectures. This mode of passive knowledge transmission has been shown to be less effective for student learning...

    Keywords: active learningmetacognitionconstructivism

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    2015-The European Bioinformatics Institute-BioModels Database
    BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.

    Keywords: computational biologyBioModels Databasebio databaselife science experiments

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    Learning Journal Assignment on Biofilms
    This is a learning journal assignment with constructive response questions on Biofilms which undergraduate students can complete with aid of reading a research article and listening to a podcast.

    Keywords: educationPodcastmicrobiologygenomicsUndergraduateAnalysisBioflimsLearning Journal Assignmet

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    Additional Figures of the Day - Parasitology
    These additional figures were used in a Parasitology course (juniors and seniors) at Radford University.

    Keywords: graphsmath attitudesResources @ BIOMAAPInterpreting Graphs

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    Using Systems Thinking in Introductory Biology Courses
    The Systems Thinking module (Units 1-3) was utilized in two separate introductory biology courses, General Biology II Lab and The Living Environment online course.

    Keywords: biologysystems thinkinglab activity

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    Does explicitly teaching leadership skills increase student persistence in STEM fields?
    Poster on leadership skills presented at the 2019 BioQUEST & QUBES Summer Workshop
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    Drawing flowcharts of lab protocols helps students prepare for biology labs
    With the publishing of the Vision and Change report, we know it is best practice to include authentic research experiences in our undergraduate science lab classes. One big challenge in teaching...

    Keywords: laboratorymolecular biologyUndergraduateprotocolflowchart

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    Defining and Understanding Pathogenic Disease: An Engaging Activity that Connects Students' Lived Experiences with their Academic Studies
    Contagious diseases are unavoidable realities of life. Thus, understanding pathogens and their respective diseases is important in many biological subfields including evolution, ecology, health...

    Keywords: infectious diseasePathogenspathogenic disease

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    Critical Zone Science Part II
    As part of our effort to model the redwood forest water budget, we used the InTeGrate Unit 5.2 to put numbers to pathways.
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    NEON Data in the Classroom: Quantifying Spatial Patterns
    Students build on fundamental concepts of spatial patterns and combine this knowledge with the open-data from the National Ecological Observatory Network to quantify spatial autocorrelation and...

    Keywords: RR Markdownlandscape ecologygroup-neon2018spatial statisticsfractalsrasters

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    Three Research-Based Quantitative Reasoning Modules for Introductory Organismal Biology Laboratories
    We have designed three laboratory modules for an introductory organismal biology course with an emphasis on quantitative reasoning and data analysis skills. Module 1 tests for dimorphism in...

    Keywords: allometryplantsAnatomytranspirationdimorphisminvertebrate biologyarthropodsplatyhelminths

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    Snapshot Serengeti Faculty Mentoring Network, Summer 2022
    The goal of our summer 2022 FMN was to develop a client-side interactive dashboard that allowed students to visualize and analyze data from the Snapshot Serengeti camera-trap research project.

    Keywords: Faculty Mentoring NetworkinteractiveSerengeti

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    Nicholas' Story
    This 3 part case on sickle cell disease focuses on visualizing and understanding the molecular basis of its cause, symptoms, complications, management, treatment, and possible cures.

    Keywords: Hemoglobinmolecular visualization and analysissickle cell diseasePDBMolecular Case Study

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    Nicholas' Story
    This 3 part case on sickle cell disease focuses on visualizing and understanding the molecular basis of its cause, symptoms, complications, management, treatment, and possible cures.

    Keywords: Hemoglobinmolecular visualization and analysissickle cell diseasePDBMolecular Case Study

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    Using Yeast to Make Scientists: A Six-Week Student-Driven Research Project for the Cell Biology Laboratory
    Traditionally-trained undergraduate students often lack an understanding of science as an active process that yields the information presented in their textbooks. One result has been a call for...

    Keywords: yeastgrowth curvecell proliferationviability

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    NEON Data in the Classroom: Implementing and Adapting an Open Education NEON Resource “Quantifying the Drivers and Impacts of Natural Disturbance Events-The 2013 Colorado Floods” for the Southern California Classroom.
    Natural disasters and subsequent ecological disturbance events illustrate the complexity of problems in ecology and environmental science, and can be used as effective teaching tools. Unpacking the...

    Keywords: data in the classroomdata interpretationTemperature ChangeprecipitationPalmer Drought Severity IndexEcological Disturbancedisturbance ecology

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    Module M.1 R basics for data exploration and management
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    CyVerse: Scalable Image Informatics
    Poster on cyberinfrastructure for the machine learning ere presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: image analysisundergraduate researchmachine learningCyVerse

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    Fostering and Sustaining Interdisciplinary Faculty Communities Around Undergraduate Teaching: Insights from the QUBES Project
    Talk given as a part of the Symposium - Communities of Practice for Math Modeling Education at the SIAM 2018 Conference

    Keywords: SIAMQUBESfaculty communitiesResources @ MMHubResources @ SIAMEd 2018

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