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    2014-Blomhøj-EtAl-Compartment models
    An overview of compartment models with many rich illustrations and much attention to various numerical methods in solutions of the resulting differential equations using Matlab. Also included is a...

    Keywords: concentrationkineticsphysiologycompartmentsalttankbalancereactionsminkbathtub

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    2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
    This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.

    Keywords: biologygene regulatory networksModelsmetabolic networkssignal transduction pathwayselectrophysiology

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    2018-Mohammed_Kaabar-A_Friendly_Introduction_to_Differential_Equations
    In this book, there are five chapters: Laplace Transform, Systems of Homogeneous Linear Differential Equations, Methods of First and Higher Orders DEs, Extended Methods of First and Higher Orders...

    Keywords: textbookordinary differential equations

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    1-139-PlantsVsHerbivores-ModeliongScenario
    In this activity, students will apply a variety of techniques for analyzing nonlinear systems (e.g., nullclines, linearization, and technologies for drawing phase portraits) to study...

    Keywords: ecologynullclinesherbivoreplant-herbivore interactionsplantlinearization

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    NELF Explorer: Drivers of Landscape Change
    Students explore the connections between land use decisions and land cover change, as well as how to predict the possible impacts of land use decisions into the future.

    Keywords: landscape ecologyscenario analysisland systems scienceLULCC

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    Using Synthetic Biology to Teach Data Science
    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
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    Developing hands-on activities linking plankton and computational thinking
    Poster on computational thinking as a method to help address complex problems, create systems, and understand behaviors presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: computational thinkingplanktonSummer Workshop 2018

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    A New Hub for QUBES based on the HUBzero Platform
    Presentation on QUBES and Hubzero given at the Seventh International Symposium on Biomathematics and Ecology: Education and Research 2014, Claremont, CA

    Keywords: QUBESHubZeroCMS

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    Lateral Transfer Maps as a Metacognitive Tool in First Year STEM Courses
    We introduce the Lateral Transfer Map (LTM), a tool for students to actively and visually explore the transfer of ideas, skills, and concepts across concurrent coursework. The LTM is an extension...

    Keywords: concept mapmetacognitionfirst-year studenttransfer

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    A Hands-on Introduction to Hidden Markov Models
    In this Lesson, we describe a classroom activity that demonstrates how a Hidden Markov Model (HMM) is applied to predict a eukaryotic gene, focusing on predicting one exon-intron boundary. This HMM...

    Keywords: transcriptionexonintronsplicing

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    Isolation and Functional Analysis of a Pancreatic Enzyme in an Introductory Student Lab
    Structure and function are correlated at all levels of biology. This topic is typically addressed early in an undergraduate class in general or molecular biology before students have gained much...

    Keywords: Protein StructureproteaseEnzymechemical bondscatalysissolubility

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    Investigating Gene Expression and Cell Specialization in Axolotl Embryos
    The process of cell specialization is critical to the formation and function of tissues in animals and plants. Although gene expression, including the regulation of transcription, is taught in most...

    Keywords: developmenttranscriptiongene expressionmodel organismembryo

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    Using Musical Instruments to Model Negative Feedback in the Hypothalamo-Pituitary-Target Gland Axes
    Homeostasis and negative feedback are crucial, yet difficult, concepts for undergraduates, particularly in the context of the hypothalamo-pituitary axes. This interactive activity was designed to...

    Keywords: cell-cell communicationhomeostasisnegative feedback

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    6-005-InsectColonySurvivalOpt-ModelingScenario
    We present a system of nonlinear differential equations to model the control of energy flow into producing workers or reproducers in an insect colony, using a set of given parameters and a number...

    Keywords: optimizationOptimal Control Theoryinsect colonyoptimal controlnatural resourcesPointryagin's Maximum Principlecontrol variable

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    2015-Khan-EtAl-How differential equations influence the tumor growth via mathematical models
    This work demonstrates the importance of differential equations to develop mathematical model of tumor growth.

    Keywords: tumorcancdercancerous cellsimmunotherapymalignant

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    2000-deOlivera-Delfino-Costa-Leite-Pinhole Water Flow From Cylindrical Bottles
    The water flowing from the first bottle feeds the second one located below it. The same concepts of mass and energy conservation now lead to a non-trivial differential equation for the lowest...

    Keywords: Torricelli's LawConservation of EnergytConservation of MassBernoulli’s Theorem

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    1972-Suresh_Sethi-Optimal Control of the Vidale-Wolfe Advertising Model
    This paper considers an optimal-control problem for the dynamics of the Vidale-Wolfe advertising model, the optimal control being the rate of advertising expenditure to achieve a terminal market...

    Keywords: Optimal Control Theoryadvertisingsales

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    2007-Joseph_Myers-Brian_Winkel-Modeling_a_Mystery_Circuit_in_Mathematics_Class_Using_Differential_Equations_Laplace_Transforms_and_Transfer_Functions
    We discuss the introduction, student discovery, and teaching of a system of differential equations which model a circuit.

    Keywords: circuitLaplace transformtransfer functionmystery circuitvoltage frequencytwo loop circuit

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    2019-Radulescu-Lundgren-A_pharmacokinetic_model_of_lead_absorption_and_calcium_competitive_dynamics
    We build and analyze a compartmental model of lead pharmacokinetics, focused specifically on addressing neurotoxicity.

    Keywords: QUBES Leadership Teamparametersabsorptionbifurcationpharmacokineticscalciumcognitive decline

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    Lizard cold tolerance and extreme weather events: a scientist spotlight featuring Dr. Shane Campbell-Staton
    Students interpret experimental and observational data about patterns in cold tolerance in the green anole. They reflect on the experience and identity of the lead researcher based on a video...

    Keywords: climate changeNatural Selectionenvironmental variationphenotypic plasticityacclimationenvironmental conditions

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