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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Using Synthetic Biology to Teach Data Science
    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.
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    QUBES: a collaboration and professional development platform for quantitative biology education
    Presentation given at BEER 2017 in Normal, IL

    Keywords: QUBESBEERResources @ QUBES - Teaching & Referencebeer17

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    Exploring Indigenous Viewpoints in the Undergraduate Biology Classroom: An Environmental Case Study Incorporating Hawaiian Traditional Ecological Knowledge
    Changing science education to foster greater equity and inclusion for Indigenous students will require effort from instructors and institutions. Instructors can help by including Traditional...

    Keywords: ecologycase studyenvironmentsystems thinkingTraditional ecological knowledgeindigenous knowledgehawai'idecolonizing scienceNative knowledgeFish ponds

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    Plant Cell Expansion and Plant Hormones
    This module introduces the cell enlargement model in the context of understanding plant hormones' effects. It is intended for an introductory biology audience.

    Keywords: plant physiologyhyperbolic equationsplant hormonescell enlargement

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    2021-Brian_Winkel-Modelling_sublimation_of_carbon_dioxide
    We report results in our efforts to model sublimation of carbon dioxide and the associated kinetics order and parameter estimation issues in our model.

    Keywords: dataparameter estimationcarbon dioxidesublimationdry ice

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    Machine Learning Meets Medicine with Jenessa Peterson
    Jenessa Peterson is a former teacher turned data scientist/engineer and Director of Learning Engineering at The Learning Agency. Her more recent work in data science has included building a...

    Keywords: data sciencemachine learningmedicine

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    DataONE Module 01: Why Data Management?
    Trends in data collection, storage and loss, the importance and benefits of data management, and an introduction to the data life cycle.

    Keywords: moduledatain-class activityHandoutproblem setdata managementDataONE

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    Augmented Reality Metabolic Pathways (ARMET)
    The ARMET app is developed using Unity, 3D molecules obtained from Protein Data Bank and ChemSpider-chemical structure database, the usage data are stored into a database (MySQL) and are analyzed...

    Keywords: BiochemistryAugmented RealityMetabolic Pathways

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    Understanding Global Climate Change: Present, Past, and Future
    Understanding global climate change through the lenses of the present, past, and future, combining modern technology and indigenous knowledge and ways of knowing.

    Keywords: climate changeglobal changeabiotic environmentindigenous knowledge

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    R for biologists
    An introductory guide to data analysis in R for life sciences researchers.

    Keywords: R

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    Resources for Assessing Educational Interventions in Biology at the Collegiate Level
    Most scientific research is judged based on the quality of controlled experiments and carefully analyzed results. In addition, proper levels of regulation in terms of biosafety and animal usage are...

    Keywords: researchassessmentpedagogylearning gainsIRBregulatory compliance

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    Biodiversity Show and Tell: An Accessible Activity to Encourage Students to Explore the Tree of Life
    An appreciation of organismal diversity is a requirement for understanding evolution and ecology, and can serve as a source of amazement and wonder that inspires students to enjoy biology. However,...

    Keywords: EvolutionecologyBiodiversity

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    A CURE-based approach to teaching genomics using mitochondrial genomes
    There is an abundance (currently over 1016 DNA bases) of publicly available genetic sequence data and a dearth of trained genomicists to process and interpret it, necessitating more trained...

    Keywords: proteinsMitochondrial GenomesNuclear GenomesrRNAtRNA

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    2017-Guy-Bart_Stan-Modelling in Biology
    This is a very rich set of notes, rich in examples and ideas for modeling. In almost all cases after a model is introduced in real context there is attention to stability analysis.

    Keywords: spring massbifurcationmass actionlimit cycles

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    Gibb’s Free Energy and the Nature of Chemical Reactions
    This module introduces Gibb’s Free Energy in the context of understanding the nature of chemical reactions. It is intended for an introductory biology audience.

    Keywords: ExponentsLogarithmsRatiosexponential equationsSequencesCell StructureOpenStaxCell Growthgeometric equations

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    Using Synthetic Biology and pClone Red for Authentic Research on Promoter Function: Genetics (analyzing mutant promoters)
    Students often memorize the definition of a transcriptional promoter but fail to fully understand the critical role promoters play in gene expression.  This laboratory lesson allows students...

    Keywords: bacteriasynthetic biologygene regulationtranscriptionstudent researchcentral dogmacloningpromoterreporter gene/protein

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    QB@CC- Quantitative Biology at Community Colleges (RCN-UBE Introduction)
    Quantitative Biology at Community Colleges (QB@CC) is a National Science Foundation (NSF) supported project that received funding in 2019. The long-term goal of QB@CC is to drive the disciplinary...

    Keywords: RCN-UBE Introduction

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    Figure of the Day - Teaching Notes - Boersma
    Teaching notes from my application of Figure of the Day in my BIOL305 Ecology lecture course for biology majors.

    Keywords: ecologygraphsmath attitudesResources @ BIOMAAPInterpreting Graphs

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    Diversity Indices: Shannon's H and E
    This module introduces Shannon's diversity index in the context of understanding how to mathematically measure the species diversity in a community. It is intended for an introductory biology...

    Keywords: ecologydiversityFunctionsOpenStaxdiversity index

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    Tension in Blood Vessels: LaPlace's Equation
    This module introduces Laplace's equation in the context of understanding tension in the walls of blood vessels. It is intended for an introductory biology audience.

    Keywords: linear equationsOpenStaxAnimal Physiology

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