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    Resource Collection v3
    No images, no description
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    NIBLSE Learning Resource Collection
    Collection of bioinformatics hosted at NIBLSE
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    Lesson V - Phylogenetics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    1999-F_Brauer-What_Goes_Up_Must_Come_Down
    It is natural to ask whether a particle propelled upwards takes longer to fall to earth from its maximum height than it takes to rise to this maximum height for frictional forces that are nonlinear...

    Keywords: resistancefallingprojectilevertical projectile

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    DEHPD 17 Steps in the Hiring Process
    A 17 step document created by people from marginalized populations for equity and diversity in hiring.
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    1989-Protopopescu-Santoro-Dockery-Combat modeling with partial differential equations
    We propose an extension of the classical modeling of combat via Lanchester equations to include one-dimensional spatial effects.

    Keywords: combatLanchester

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    6-017-OncolyticViruses-ModelingScenario
    Students explore oncolytic virotherapy using systems of differential equations and numerical simulations.

    Keywords: cancercancer-immune dynamicsimmune suppressor drugoncolytic virusvirotherapy

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    ODD Description of the BEFORE Beech Forest Model
    This is a supplemental resource from ABM

    Keywords: case studytextbookNetLogoagent-based modelingODD protocol

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    Hidden Markov Model
    Hidden Markov models are a set of mathematical tools that can be used to draw inferences about genomic and evolutionary processes.

    Keywords: hidden markov models

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    Dynamic Programming
    In bioinformatics, dynamic programming is mainly used to align nucleotide and amino acid sequences, and to predict RNA and protein folding from primary sequence data.

    Keywords: RNAamino acid sequenceSequence alignmentdynamic programmingprotein folding

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    Deme 2.0
    This workbook simulates the population genetics of a single gene with two alleles. It can simultaneously model up to three local populations, which may differ in their selection coefficients.

    Keywords: population geneticsGenetic DriftNatural Selection

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    Biodiversity
    Biodiversity allows the diversity of a biological population to be estimated with both the Shannon and Simpson biodiversity indices based on information theory.

    Keywords: Shannon diversity indexSimpson diversity indexBiodiversity indicesInformation theory

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    Author Guidelines
    These Author Guidelines are designed to assist module authors throughout this participatory process of creating a new OCELOTS module or adapting an existing one.
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    1988-EY_Rodin-N_Taber-Yeast Growth Modelling in a Laboratory
    Modeling simple growth with some missing data and doing linear regression for parameter estimation in closed form solution of differential equation model and data.

    Keywords: regressionyeastgrowth

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    1994-T_Gruszka-A_Balloon_Experiment_in_the_Classroom
    The experiment consists of dropping a balloon from two different heights and recording the time it takes to hit the floor. The following experiment involves a balloon, a stopwatch, and a...

    Keywords: differential equationsresistancegravityfree fallaccelerationballoon

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    Sequence Similarity in Developmental Biology - A Bioinformatics Exercise Using Myostatin
    This exercise leads upper level biology majors in an inquiry-based excursion to determine how similar the signaling molecule, myostatin, is between humans and mice, using a basic set of...
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    2015-Carl_Lutzer-Using Expected Value to Introduce the Laplace Transform
    We propose an introduction to the Laplace transform in which Riemann sums are used to approximate the expected net change in a function, assuming that it quantifies a process that can terminate at...

    Keywords: Expected ValueRiemann sumnet change

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    2011-Yuan-EtAl-Real life applications of ODEs for Undergraduates
    This study introduces real-life mathematical theories and models of international relationships suitable for undergraduate ordinary differential equations, by investigating contradicts between...

    Keywords: arms raceRichardson modelBattle of Curupaytíinternational relationships

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    1994-T_Gruszka-A Balloon Experiment in the Classroom
    The following experiment involves a balloon, a stopwatch, and a measurement device such as a meter stick,

    Keywords: resistancefalling bodydragballoon

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    Genome Solver: Complete Set of Lessons
    The Genome Solver Project began as a way to teach faculty some basic skills in bioinformatics - no coding or scripting. These Lessons also work well in the undergraduate classroom, culminating...

    Keywords: bioinformaticsNIBLSEBioinformatics EducationBioinformatics and GenomicsC4. Bioinformatics toolsC5. Data retrievalC6. ModelsC8. Data typesC9. ImplicationsRecommended by NIBLSE

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