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Tags: Homework

All Categories (1-20 of 96)

  1. Lesson V - Phylogenetics

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    https://qubeshub.org/qubesresources/publications/858/?v=2

  2. Lesson VII - Synteny

    22 Oct 2019 | Teaching Materials | Contributor(s):

    By Gaurav Arora1, Anne Rosenwald2, Vinayak Mathur3

    1. Gallaudet University 2. Georgetown University 3. Cabrini University

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    https://qubeshub.org/qubesresources/publications/1414/?v=2

  3. Lesson IV - Comparative Genomics

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    https://qubeshub.org/qubesresources/publications/857/?v=2

  4. Lesson III - Annotation

    10 Oct 2019 | Teaching Materials | Contributor(s):

    By Anne Rosenwald1, Gaurav Arora2, Vinayak Mathur3

    1. Georgetown University 2. Gallaudet University 3. Cabrini University

    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

    https://qubeshub.org/qubesresources/publications/856/?v=2

  5. Optimal Foraging in Swirl

    08 Oct 2019 | Teaching Materials | Contributor(s):

    By Mary Elizabeth McWhirt1, Emily Weigel1

    Georgia Institute of Technology

    This lesson centers around the marginal value theorem (MVT, Charnov 1976), which describes how animals should forage in patches. It serves as a pre-lab to teach MVT basics, vectors, ANOVA, and...

    https://qubeshub.org/qubesresources/publications/1213/?v=2

  6. Altruism Simulation Activity

    04 Oct 2019 | Teaching Materials | Contributor(s):

    By Nicole Chodkowski

    Radford University

    An altruism activity that uses a NetLogo altruism simulation.

    https://qubeshub.org/qubesresources/publications/1431/?v=1

  7. Introduction to Data Management and Metadata using NEON aquatic macroinvertebrate data

    30 Sep 2019 | Teaching Materials | Contributor(s):

    By Kaitlin Stack Whitney

    Rochester Institute of Technology

    This lesson focuses on understanding metadata, the data about the data, using aquatic macroinvertebrate abundance and species information from a variety of NEON sampling locations.

    https://qubeshub.org/qubesresources/publications/1429/?v=1

  8. Lesson VII - Synteny

    08 Sep 2019 | Teaching Materials | Contributor(s):

    By Gaurav Arora1, Anne Rosenwald2, Vinayak Mathur3

    1. Gallaudet University 2. Georgetown University 3. Cabrini University

    The lesson teaches about synteny or the order of genes along a chromosome, which is useful for looking at orthologous genes between two species or strains.

    https://qubeshub.org/qubesresources/publications/1414/?v=1

  9. Electrical and chemical communication in the nervous system

    31 Aug 2019 | Teaching Materials | Contributor(s):

    By Patrick Cafferty

    Emory University

    This activity guides students through an online tutorial to examine the electrical and chemical communication of neurons.

    https://qubeshub.org/qubesresources/publications/1405/?v=1

  10. REMNet Tutorial, R Part 4: Creating Taxa Plots in R 5.2.19

    28 Aug 2019 | Teaching Materials | Contributor(s):

    By Jessica Joyner

    CUNY Brooklyn College

    Video on making taxa bar plots in R from the Research Experiences in Microbiomes Network

    https://qubeshub.org/qubesresources/publications/1313/?v=1

  11. REMNet Tutorial, R Part 3: Creating Alpha Diversity Plots in R 5.2.19

    28 Aug 2019 | Teaching Materials | Contributor(s):

    By Jessica Joyner

    CUNY Brooklyn College

    Video on creating alpha diversity plots in R from the Research Experiences in Microbiomes Network

    https://qubeshub.org/qubesresources/publications/1312/?v=1

  12. Ethics in Synthetic Biology

    15 Aug 2019 | Teaching Materials | Contributor(s):

    By Lisa Scheifele

    Loyola University Maryland

    This collection of four activities provide students with an introduction to thinking about ethical concerns in human genome synthesis, gene editing, metabolic engineering, and synthetic genomes.

    https://qubeshub.org/qubesresources/publications/1396/?v=1

  13. Should we synthesize a human genome?

    15 Aug 2019 | Teaching Materials | Contributor(s):

    By Lisa Scheifele

    Loyola University Maryland

    Two articles introducing the Human Genome Project-Write and asking questions about the ethics of the project.

    https://qubeshub.org/qubesresources/publications/1395/?v=1

  14. Ethics of Metabolic engineering

    15 Aug 2019 | Teaching Materials | Contributor(s):

    By Lisa Scheifele

    Loyola University Maryland

    This is an ethical reflection for students on an issue in metabolic engineering and the potential for "home-brew" morphine. The case study asks students to reflect on material in the linked...

    https://qubeshub.org/qubesresources/publications/1394/?v=1

  15. Ethics in synthetic genomics

    15 Aug 2019 | Teaching Materials | Contributor(s):

    By Lisa Scheifele

    Loyola University Maryland

    This is an ethical reflection for students on an issue in genome engineering and the synthesis of potentially infectious viruses. The case study asks students to reflect on material in the linked...

    https://qubeshub.org/qubesresources/publications/1393/?v=1

  16. Ethics of Gene Editing

    15 Aug 2019 | Teaching Materials | Contributor(s):

    By Lisa Scheifele

    Loyola University Maryland

    This is an ethical reflection for students on an issue in gene editing. The case study asks students to reflect on material in the two linked articles. Also included is the grading rubric.

    https://qubeshub.org/qubesresources/publications/1392/?v=1

  17. Using Synthetic Biology to Teach Data Science

    05 Aug 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1

    College of William and Mary

    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/qubesresources/publications/1326/?v=3

  18. Using Synthetic Biology to Teach Data Science

    30 Jul 2019 | Teaching Materials | Contributor(s):

    By Margaret S Saha1, Beteel Abu-Ageel1, Sanjana Challa1, Xiangyi Fang1, Chai Hibbert1, Anna Isler1, Elias Nafziger1, Adam Oliver1, Hanqiu Peng1, Julia Urban1, Vivian Zhu1

    College of William and Mary

    Poster and supplemental materials on using synthetic biology to introduce students to meaningful data mining, analysis, and application to engineering novel biological constructs.

    https://qubeshub.org/qubesresources/publications/1326/?v=2

  19. Malawian Aquaculture Pond Ecosystem Challenge

    24 Jul 2019 | Teaching Materials | Contributor(s):

    By Jessica Coyle

    This case study challenges students to design a pond that will provide supplemental food security to a rural Malawian village. In the process they apply concepts of primary and secondary...

    https://qubeshub.org/qubesresources/publications/1365/?v=1

  20. Aquatic Nutrient Levels and Climate Change

    16 Jul 2019 | Teaching Materials | Contributor(s):

    By Elli Bosch1, Kaycee Faunce1, Amanda Thompson

    Virginia Commonwealth University

    This learning module was designed to introduce students to the aquatic nutrients nitrogen and phosphorus, their roles in ecosystem function and nutrient pollution, and what impacts climate change...

    https://qubeshub.org/qubesresources/publications/1356/?v=1