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GEA Introductory lesson on RNA-Seq
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25 Jul 2020 | Contributor(s): Jason Williams, Judy Brusslan, Ray Enke, Matthew Escobar, Vince Buonaccorsi | doi:10.25334/GM6A-VC81
This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs. normal diet) and disease (cancer vs. normal tissue).
A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
07 Jun 2019 | Contributor(s): Rachael St. Jacques, Max Maza, Sabrina Robertson, Guoqing Lu, Andrew Lonsdale, Ray A Enke | doi:10.25334/Q4D172
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
28 Feb 2019 | Contributor(s): Rachael St. Jacques, Max Maza, Sabrina Robertson, Guoqing Lu, Andrew Lonsdale, Ray A Enke | doi:10.25334/Q4P733
Using DNA Subway to Analyze Sequence Relationships
28 May 2018 | Contributor(s): Jason Williams, Ray A. Enke, Oliver Hyman, Emily Lescak, Sam S Donovan, William Tapprich, Elizabeth F Ryder | doi:10.25334/Q4J111
This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.
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