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GEA Introductory lesson on RNA-Seq

Author(s): Jason Williams1, Judy Brusslan2, Ray Enke3, Matthew Escobar4, Vince Buonaccorsi5

1. Cold Spring Harbor Laboratory 2. California State University Long Beach 3. James Madison University 4. California State University San Marcos 5. Juniata College

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Summary:
This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs. normal diet) and disease (cancer vs. normal tissue).

Licensed under CC Attribution-ShareAlike 4.0 International according to these terms

Version 1.0 - published on 25 Jul 2020 doi:10.25334/GM6A-VC81 - cite this

Keywords

  1. data science
  2. bioinformatics
  3. Genome Browser
  4. RNAseq
  5. high throughput sequencing
  6. mRNA
  7. Alignment
  8. NCBI Sequence Read Archive

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