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Microbiome Analysis with Oxford Nanopore 16S amplicon sequencing data

Author(s): Alice Tarun1, Mao-Lun Weng2

1. St. Lawrence University 2. Westfield State University

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Summary:
The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with data obtained from nanopore sequencing of 16S DNA…

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The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with data obtained from nanopore sequencing of 16S DNA extracted from dog feces, conducted by an undergraduate student.

Licensed under CC Attribution-ShareAlike 4.0 International according to these terms

Version 1.0 - published on 30 Nov 2021 doi:10.25334/TM6S-JE24 - cite this

Keywords

  1. microbiome analysis tool
  2. Nanopore

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Description

Final Report for the Nanopore Microbiome Analysis Working Group BIOME 2021

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