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    Box-of-Lessons Review, Fall 2022 - YouTube
    This video described the working group activities for BIOME Institute 2022 - Fall working group

    Keywords: carbohydratesproteinsNucleic Acid Structurebiomolecular structurebiomolecular visualizationProtein Data Bankresources @ Molecular CaseNetBIOME 2022pilotinglipidsbiomolecules

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    Collaborative case writing and field testing with Molecular CaseNet brings together discipline specific expertise for innovative pedagogical tools in the classroom
    Molecular case studies (MCS) use an interesting story as a hook , followed by exploration of biochemistry of one or more molecules of interest.  They can be useful in teaching about macromolecule...
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    BIOME Avida ED Report video - YouTube
    Avida-ED is a digital evolution software program that allows students to ask questions and test hypotheses related to evolutionary concepts. Our working group explored how to incorporate Avida-ED...
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    Microbiome Analysis with Oxford Nanopore 16S amplicon sequencing data
    The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with...

    Keywords: microbiome analysis toolNanopore

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    BIOME 2021 Scientist Spotlight/Data Nugget Working Group Video Recap
    This two-minute overview video describes the work of the 2021 fall working group for Scientist Spotlight/Data Nugget course resources. Group members began developing new projects for a variety of...

    Keywords: Resources @ Data Nuggetsscientist spotlights

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    Ungrading to Decentered Grading Lightning Talk 2021 - YouTube
    BIOME 2021 Ungrading Working Group Lightning Talk

    Keywords: assessment practices

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    Team microBIOME Fall 2020 - DIY microbiome analysis
    This is our final team report for this year's BIOME Institute 2020. Learn about what we got up to and what we're planning for Spring 2021. If you want more information on REMNet go...

    Keywords: microbiomeDNA SubwayDIYREMNet microbiomesNephele

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    BioTA Podcast Working Group Lightning Talk - YouTube
    This lightning talk outlines out work to develop a set of podcasts and in0class activities. The podcast episodes on metagenomics in general are available. Additional resources and additional...

    Keywords: Flipped classroommetagenomics

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    Genomics Lessons with GEA - RNA-Seq CURES
    Our BIOME Group worked towards developing a set of learning goals for faculty who plan to launch a CURE based on RNA-Seq data. We also developed a workflow for analysis of either prokaryotic or...
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    Sharing Stories: Developing OER around Podcasts
    Our team met in the fall of 2021 to discuss and develop resources around podcasts. We created lists of podcast episodes for several courses, learned about listening guides, shared assignment...

    Keywords: podcastslistening guides

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    Project Leadership Resources - Bringing Leadership Experiences into the Classroom
    The Project Leadership Program is a pedgagogical approach that is designed to improve teamwork through the integration of shared leadership experiences. The program involves three components: a...

    Keywords: communicationcollaborationfeedbackleadership skillsteam workleadership developmentsense of belongingproject leadership

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    SWP Biology Writing Resource Guide
    This Guide was created by the STEM Writing Project at Wake Forest University. We are STEM teachers and education researchers who want to make scientific writing a bigger part of students' training....

    Keywords: teaching scientific writing

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    Quantifying Bacterial Growth in the Guts and Hemolymph of Fruit Flies: Mathematical Modeling and Data Interpolation/Extrapolation
    In this activity, students will analyze raw data obtained from an experiment that explores the effect of overexpressing the Ssk protein in order to strengthen the intestinal barrier and prevent...

    Keywords: graphingexponential growthlinear modelsqbccinterpolationConcepts in Statistics and Precalculus Understanding exponential rates and linear slopesExtrapolation

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    Effect of the Intestinal Protein Snakeskin on the Lifespan of Fruit Flies: A Kaplan-Meier Survival Analysissource Draft (1)
    In this activity, students perform the Kaplan-Meier survival analysis on raw data obtained from an experiment that explores the effect of overexpressing the Snakeskin (Ssk) protein on the lifespan...

    Keywords: graphingBiochemistryhypothesis testingcalculus and biologyapproximating areas under curvesqbccCellular and Molecular BiologyCreate graphsInterpret graphsSolving Equations and Inequalitiesinterpret tablesConcepts in Statisticsusing statisticschi-square analysissurvival analysis

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    Student Activities to Accompany BioTA Podcast Episode 23: Chocolate Is Life
    This instructional resource provides three activities to accompany a podcast on chocolate, including critical reading of primary literature and a focus on social justice and equity issues. The...

    Keywords: ecologyPodcastsocial justicepollinationChocolateCacao

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    Impact of Introduction of American Bullfrogs on Species Diversity
    This module explores the introduction of the American bullfrog on their ecosystem. Using species diversity calculations and data collection techniques, students explore how the bullfrog affected...

    Keywords: ecologyconservationspecies richnessBiodiversityspecies diversitydiversity indicessamplingspecies evenness

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    Biodiversity Counts! Making sense of diversity metrics and graphs
    In this lesson students 1) become familiar with various graphs that are used to study diversity patterns within and across sites, 2) learn about some of the questions that can be addressed by...

    Keywords: graph interpretationfmnmetabarcodingbiodiversity literacyBioGraphIrepresentation in STEMalpha diversitybeta diversity

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    Cancer Genetics and an Interview with a Deaf Biomedical Researcher
    In this lesson, learners will learn about cancer genetics and understand and interpret graphs showing quantitative trait locus (QTL) data, survivor curve data, and other genetics data. Then,...

    Keywords: graph interpretationfmnDeaf EducationBioGraphIrepresentation in STEMBioGraphI graph InterpretationDeaf representation in STEM

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    Building Biodiversity Datasets for Invasive Species
    A module guiding students through the process of mapping biodiversity data and building a biodiversity dataset to study the spread and impacts of the invasive aquatic plant species, European...

    Keywords: Management Of Datanatural historyField researchconservation ecologyAquatic invasive speciesbiodiversity informatics

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    Paleoclimate and Ocean Biogeochemistry (Project EDDIE)
    This module guides students in an examination of how surface ocean productivity relates to global climate on glacial-interglacial timescales and how the availability of ocean nutrients can be...

    Keywords: Oceanographydata literacyocean productivity

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