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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    STEM as Culture: Exploring exclusion and inclusion in mathematics and biology
    This is a paper given as a plenary lecture at the second CalcConf in Bergen, Norway, June 2023. The paper explores how marginalization in society & living between worlds becomes a superpower in...

    Keywords: calculusbiocalculusrule of fivemarine biologyco2Microagressionsmauna keamauna loafeministtestimonioindigenous epistomologyanzalduagutierrezdisciplinary microaggressions

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    Save the Bees, Ditch the Plow: A lesson exploring how squash bee abundance is affected by varying levels of soil disturbance.
    The purpose of this lesson is to explore the effects that three varying degrees of soil disturbance has on the squash bee abundance that is observed. We will learn about the importance of...

    Keywords: beesmutualismpollinatorscommunity-based conservationno till farmingreduced tillage

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    QUBES: a community focused on supporting teaching and learning in quantitative biology
    This letter provides an overview of the Quantitative Undergraduate Biology Education and Synthesis (QUBES) Project funded through the National Science Foundation.

    Keywords: mathematicseducationQUBESprofessional developmentbiologycollaborationproceedings

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    Learn Biological Sciences and Environmental Science through biodiversity and pollution
    Biodiversity or biological diversity is the variety of and variability of biological life on Earth. Biodiversity is existing due to variation among living organisms from different sources air,...

    Keywords: databiologydata scienceBiodiversityclimateenvironmental scienceSpeciespollutionanalyze data

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    Molecular Biology of the Cell (MBoC)
    An online journal focusing upon generally-applicable studies of cell biology.

    Keywords: cell biologycellmolecular biologyResources @ ASCBResources @ QUBES - Teaching & Reference

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    Taking a Second Look: Investigating Biology with Visual Datasets
    An article exploring the use of visual datasets as an educational aid for biology students.

    Keywords: Evolutionpedagogyclassificationphylogenyvisual learningResources @ QUBES - Teaching & Reference

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    A Critical Guide to the PDB
    This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.

    Keywords: NIBLSEGOBLETInstructorResources

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    The Legacy of Redlining in Oakland, CA
    The issues of redlining and environmental justice will be introduced and used as a framework for a number of topics in the third part of the semester in a non-majors Environmental Science course.

    Keywords: environmental scienceenvironmental justiceredliningenvironmental racism

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    Regulation of Malate Dehydrogenase by Fumarate
    A "snippet" paper

    Keywords: JoCURE

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    BioQUEST Webinar: CourseSource - YouTube
    Follow the link to the webinar video, "An Introduction to the CourseSource Journal and Making Your Own Collections". This webinar provides an overview of CourseSource, how to publish your teaching...
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    Citations
    Published Avida-Ed article

    Keywords: EvolutioncurriculumSelectionDigital Organisms

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    Assessment of Science Inquiry
    Resource from the 2015 BioQUEST Summer Workshop

    Keywords: assessmentconceptsSoTL

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    Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    Keywords: modelingcitizen sciencehypothesis testingdata scienceclimate changeR programming languageBiodiversityplant animal interactionsinquiry-based learningspecies distributionseco-informatics

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    50 Years of Data Science
    This paper reviews some ingredients of the current “Data Science moment”, including recent commentary about data science in the popular media, and about how/whether Data Science is really...

    Keywords: statisticsbig datadata sciencemachine learning

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    Sting, Carry and Stock: How Corpse Availability Can Regulate De-Centralized Task Allocation in a Ponerine Ant Colony
    Model showing that organization of work through a common stomach system can allow Ectatomma ruidum to collectively forage for food in a robust, reactive and reliable way

    Keywords: differential equationsmodelinginsect colonysystems theory

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    Learning Communities as a Driver for Humanizing STEM: Cultivating Authentic Conversations about Anti-Racism in Introductory Biology Pedagogy using Duoethnography
    In this study we present a retrospective debrief of a learning community of college biology professors who were exploring how to define and implement racial equity-focused practices and content in...

    Keywords: Equitysocial justicediversity

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    Evaluation of DEIJ practices in learning spaces
    Our Accelerating Systemic Change Network (ASCN) Working Group 5 is a group which focuses on DEIJ - Diversity, Equity, Inclusive and Justice. Taking into account the evolution of learning...

    Keywords: stemassessmentUndergraduatescienceFacultyriosDEIJASCNlearning space

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    A Critical Guide to Unix
    This Critical Guide in the Introduction to Bioinformatics series briefly introduces the Unix Operating System, and provides a subset of some of the most helpful and commonly used commands....

    Keywords: NIBLSEUNIXbasic UNIX commandsGOBLETInstructorResources

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    Sizes, Scales and Specialization: Using Relative Proportions and Scientific Notation to Highlight the Diversity of Cell Types
    This module explores how cell size and shape varies across cell types in the human body by having students calculate relative proportions of numbers in scientific notation.

    Keywords: ExponentsRatiosCellsqbccmanipulate equationsCellular and Molecular BiologyVisual Accommodationsconverting unitschanging scales

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    The ODD protocol: A review and first update
    The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs).

    Keywords: agent-based modelabmstandardizationODD protocolModel descriptionModel formulationScientific communicationChapter 3model replic

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