You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Hidden Markov Model
    Hidden Markov models are a set of mathematical tools that can be used to draw inferences about genomic and evolutionary processes.

    Keywords: hidden markov models

    79

    views

    16

    downloads

    0

    comments

    0

    adaptations

    Quantifying Bacterial Growth in the Guts and Hemolymph of Fruit Flies: Mathematical Modeling and Data Interpolation/Extrapolation
    In this activity, students will analyze raw data obtained from an experiment that explores the effect of overexpressing the Ssk protein in order to strengthen the intestinal barrier and prevent...

    Keywords: graphingexponential growthlinear modelsqbccinterpolationConcepts in Statistics and Precalculus Understanding exponential rates and linear slopesExtrapolation

    2080

    views

    344

    downloads

    0

    comments

    0

    adaptations

    Navigating Bacterial Changes in Aging Organisms: Graphs, Patterns, and Models
    Aging is an incredibly important area of research, and recent biological advances implicate the intestines in aging pathologies. Given that the gut harbors an immense amount of an organism’s...

    Keywords: statisticsgraphingmathematics for life sciencesmathexponential growthPrecalculus

    207

    views

    103

    downloads

    0

    comments

    0

    adaptations

    Modeling Trophic Interactions in Rice Agriculture: A Jigsaw Approach
    Students explore four different issues related to trophic interactions that affect modern rice agriculture practices and consider relationships between these issues using Lotka and Volterra...

    Keywords: mathematical modelLotka-Volterrajigsawfood chaintrophic cascadespredator-prey interactionsfood web

    1198

    views

    978

    downloads

    0

    comments

    0

    adaptations

    Circle Train Math Modeling Task
    This math modeling task is appropriate for high school Precalculus students. The students use their knowledge of transformations of trigonometric functions to create models for horizontal and...

    Keywords: mathematical modelTrigonometric Functionsparametric equationstransformations of functions

    1049

    views

    366

    downloads

    0

    comments

    0

    adaptations

    Introduction to Mathematical Modeling in Biotechnology, Cell Biology, and Physiology
    The course is a mathematical and computational exploration of five diverse areas of biology: human locomotion, gene sequence analysis, signal transduction pathways involved in cancer,...

    Keywords: mathematical modelingcoursehuman locomotionneuroanatomyneurophysiologysignal transductiongene sequence analysis

    1021

    views

    322

    downloads

    0

    comments

    0

    adaptations

    Pharmacokinetics
    This Excel module explores how drugs are processed and absorbed in the human body.

    Keywords: drug metabolismpharmacokinetics

    78

    views

    47

    downloads

    0

    comments

    0

    adaptations

    Frayer model growth mindset
    A Frayer model worksheet for the concept of growth mindset.

    Keywords: growth mindsetFrayer model

    2111

    views

    773

    downloads

    0

    comments

    0

    adaptations

    COVID-19 Model
    This Excel worksheet implements an SEAIHRD model for Covid-19 (Susceptible, Exposed, Asymptomatic infective, symptomatic Infective, Hospitalized infective, Recovered, Deceased).

    Keywords: infectious diseaseCOVID19

    208

    views

    29

    downloads

    0

    comments

    0

    adaptations

    Deme 2.0
    This workbook simulates the population genetics of a single gene with two alleles. It can simultaneously model up to three local populations, which may differ in their selection coefficients.

    Keywords: population geneticsGenetic DriftNatural Selection

    93

    views

    69

    downloads

    0

    comments

    0

    adaptations

    Linkage Analysis
    This Excel workbook simulates a linkage analysis problem with up to four alleles. Based on the offspring produced by a multihybrid testcross, the user builds a model of the gene order,...

    Keywords: recombinationlinkage analysis

    93

    views

    31

    downloads

    0

    comments

    0

    adaptations

    Mystery box puzzle for model based reasoning
    This is a computer based problem solving activity that I use to engage introductory biology students with discussions about model based reasoning.

    Keywords: Model Based ReasoningScientific reasoningpuzzle

    1110

    views

    504

    downloads

    1

    comments

    0

    adaptations

    Discrete Math Modeling with Biological Applications (Course Materials)
    These are the materials for Math 214 offered at Rhodes College.

    Keywords: labsagent-based modelingDiscrete Difference Equationsmatrix modelscoursebiomath coursedemonstrationin-class activitylab protocolproblem set

    1235

    views

    1548

    downloads

    0

    comments

    0

    adaptations

    An introduction to population matrix models: a swirl lesson
    Students will learn how to set up a population matrix model in R and use it for demographic analysis of a population, including projecting population growth, determining lambda and the stable age...

    Keywords: population dynamicsRpopulation growthonlinedemographypopulation projection modelquantitative biologypopulation modelmatrix modelspopulation ecologyage structurepopulation biologypopulation modelingSwirlDemographic processespopulationLeslie matrix

    2456

    views

    6426

    downloads

    0

    comments

    0

    adaptations

    Luria-Delbruck
    These two workbooks model the evolution of phage resistance in a bacterial population under two alternative hypotheses.

    Keywords: phageLuria-Delbruckresistance

    1563

    views

    283

    downloads

    2

    comments

    0

    adaptations

    Tag You're It: A Lesson Investigating Study Design and Survival Analysis on an American Shad Tagging Study
    In this lesson, students will learn about the various mark-recapture and tagging methods that are used in various scientific disciplines and the information they can gather. Key elements of...

    Keywords: survival analysisAmerican ShadCox Proportional Hazards ModelStudy Design

    299

    views

    448

    downloads

    0

    comments

    0

    adaptations

    SIR BuildIt
    An introduction to epidemiological models using interactive Excel worksheets

    Keywords: modelinginfectious diseaseInfectious Disease ModelingSIR modelsSIR

    4075

    views

    3384

    downloads

    0

    comments

    0

    adaptations

    Working with plant phenology data and fitting a nonlinear model using least squares in R
    A participatory live-coding lesson on working with NEON phenology data and fitting a sine-wave model to determine when different species get and lose their leaves.

    Keywords: modelingRphenologyNEONRstatscodeparticipatory live-coding

    3049

    views

    2224

    downloads

    0

    comments

    0

    adaptations

    Climate Change Module (Project EDDIE): Instructor Implementation
    This details an implementation of the climate change module, where students explore how climate is using data. Produced by Project EDDIE.
    795

    views

    664

    downloads

    0

    comments

    0

    adaptations

    MathBench Population Dynamics Module Activity
    The resource accompanies the Mystery of the Missing Housefly Population Dynamics MathBench module which explores exponential and logistic growth models. Students explore the assumptions of the...
    1132

    views

    617

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search