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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Data Ethics
    Data ethics and the use of digital data

    Keywords: data scienceresearch ethicsdata ethics

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    Communicating with Data: Infographic with Digital Data
    Working collaboratively in teams of 2-4 researchers, students engage in targeted projects to address critical information and research needs using digital biodiversity data.

    Keywords: databasesdata in the classroomundergraduate researchdigital collectionscourse-based research experiences (CUREs)biodiversity collections

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    Ethics in ecological forecasting: four case-based teaching modules
    Working with ecological data often involves ethical considerations, particularly when data are applied to address societal needs. However, data science ethics are rarely included as part of...

    Keywords: data scienceremote sensingethicsuncertaintyecological forecastingindigenous knowledgetropical forestscultural competenceconflicts of interestmarine fisheriesflying foxesfreshwater qualityinequities

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    Calling Bull in an Age of Big Data with R
    Use the calling bull course to introduce students to data, ethics, visualization, and R.

    Keywords: data scienceinformation literacydata literacyethicscallin bullcalling bull

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    Examining Medical and Scientific Racism Using the Story of Henrietta Lacks
    This is a semester-long project in which students read and discuss the story of Henrietta Lacks from multiple ethical perspectives. This project was developed for an undergraduate science ethics...

    Keywords: diversity equity and inclusiondecolonizing scienceanti-racist pedagogy

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    Linking Intermediate Disturbance Hypothesis to Traditional Ecological Knowledge and Conservation
    Traditional Ecological Knowledge is based on deep understanding of systems from observations made over hundreds to thousands of years. This resource connects Traditional Ecological Knowledge to...

    Keywords: climate changeenvironmental justiceintermediate disturbance hypothesisTraditional ecological knowledge

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    Take 4DEE outside: Using campus and local resources to photograph ecological concepts
    In my introductory courses in environmental science and ecology, students work on a three-part project throughout the 16-week semester (called “Finding Ecology Where You Look”) to focus on making...

    Keywords: ecologyenvironmental scienceconcept inventoryPhotography4DEE Framework

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    Database Construction and Sampling
    Creating your own database is an excellent way for students to learn the trials and tribulations of data collection and management. Construction of three simple databases using a spreadsheet is...

    Keywords: databasesdata managementdata collectiondata ethicsdata integrity

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    Calling Bull: Data Reasoning in a Digital World
    "So, the aim of this course is to help students navigate the bullshit-rich modern environment by identifying bull seeing through it, and combating it with effective analysis and argument."

    Keywords: data scienceinformation literacydata literacyethicscallin bullcalling bull

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    Teaching Data Viz and Communication as an Undergraduate Biology Course: Syllabus and Resources
    Teaching materials co-developed for a new upper-level undergraduate biology course to teach data exploration and communication without requiring previous coding experience.

    Keywords: data visualizationR programming languagedata literacycalling bulldata viztidy data

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    Teaching Data Viz and Communication as an Undergraduate Biology Course: Assignments and Projects
    Teaching materials co-developed for a new upper-level undergraduate biology course to teach data exploration and communication without requiring previous coding experience.

    Keywords: data visualizationR programming languagedata literacycalling bulldata viztidy dataOur World in DataDear Data

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    Conservation and ethics of using synthetic genetics
    This contains teaching material - powerpoints and handouts that can be adapted for lectures and/or discussion groups.
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    Strategic Planning for REU and Research Readiness
    Students complete a personal strategic plan, examining their strengths, vision and mission for completing an REU or research experience.

    Keywords: undergraduate researchREUstrategic planningSWOTresumepersonal statement

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    BSURP Guided goal-setting workshop for undergraduate researchers
    Lesson plan, slides, and worksheet for a guided research goal-setting workshop. Designed for undergraduates in the Stanford Biology Summer Undergraduate Research Program (BSURP).

    Keywords: undergraduate researchworkshopsgoalsbioBUDS

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    REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
    Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: geneticsstatisticsdata analysisgraphingRStudioVideoexperimental designR programming languagemicrobiomesstudent researchinterdisciplinary educationlimnologyeco-informaticsresearch in the classroomtidyverseWorking with datasetsREMNet

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    REMNet Tutorial, R Part 3: Creating Alpha Diversity Plots in R 5.2.19
    Video on creating alpha diversity plots in R from the Research Experiences in Microbiomes Network

    Keywords: VideoMicrobiology EducationR programming languagemicrobiomesCoastal wetlandsmanagementnortheastsea-level risesalt marshresearch in the classroomREMNeturban microbiomes

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    REMNet Tutorial, Excel Part 4: Focusing on Taxonomy 4.26.19
    Video on analyzing microbiome data in Excel from the Research Experiences in Microbiomes Network

    Keywords: The Analysis of Biological DataExcelVideoMicrobiology Educationteaching with technologymicrobiomesSwirlresearch in the classroomREMNeturban microbiomes

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    Human Dimensions in Amphibian Conservation: Addressing Threats
    This module introduces students to the theme of human dimensions in conservation and provides them with an opportunity to engage in practices related to social science research.

    Keywords: conservationhuman dimensionsamphibianssocial scienceconceptual modelstakeholder analysisopen standardsresearch proposalSPARCnet

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    iBEARS Poster
    A description of the new NSF INCLUDES iBEARS network including background, project goals, project outcomes, connections to be made through QUBES, and future directions.
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    Examining human impacts on tusk evolution in elephants using authentic research data using Serenity
    In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...
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