You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Exploring Functions for Common Phage Proteins
    This resource is designed to help students better understand the functions of common structural and enzymatic phage proteins, and to relate these functions to phage structure using electron...
    1204

    views

    2072

    downloads

    0

    comments

    0

    adaptations

    Module M.1 R basics for data exploration and management
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    861

    views

    517

    downloads

    0

    comments

    0

    adaptations

    Module M.3 Visualizing data with ggplot2
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    450

    views

    236

    downloads

    0

    comments

    0

    adaptations

    Module M.2 Descriptive statistics
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    636

    views

    224

    downloads

    0

    comments

    0

    adaptations

    Birds and Lice: Reciprocal Natural Selection
    This exercise investigates the form and function of lice and their relationship to their bird host.

    Keywords: BiodiversityparasitesbirdsCoevolutionnatural history collections

    1847

    views

    719

    downloads

    0

    comments

    0

    adaptations

    Genome Sequence Data in R using Biostrings (Swirl Lesson)
    By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...

    Keywords: R programming languagecourse-based undergraduate research experienceBioinformatics and GenomicsCURECUREscourse-based research experiences (CUREs)STEM CUREsComparative genomicsBioconductor

    1312

    views

    1272

    downloads

    0

    comments

    0

    adaptations

    Sickle Cell Anemia using Nicholas’ Story
    The goal of this exercise is to introduce students to 3-D structures of biological molecules, visualize and manipulate them to understand their functions. The exercise also helps them see the...

    Keywords: Hemoglobinsickle cell diseaseMolecular Case Study

    1172

    views

    646

    downloads

    0

    comments

    0

    adaptations

    Diversity Indices: Shannon's H and E
    This module introduces Shannon's diversity index in the context of understanding how to mathematically measure the species diversity in a community. It is intended for an introductory biology...

    Keywords: ecologydiversityFunctionsOpenStaxdiversity index

    1528

    views

    345

    downloads

    0

    comments

    0

    adaptations

    Lung Capacity and Rhythms in Breathing
    This module introduces rhythmic inhaling and exhaling in the context of understanding trigonometry and sine waves. It is intended for an introductory biology audience.

    Keywords: Trigonometrysine wavesAnimal Physiology

    861

    views

    204

    downloads

    0

    comments

    0

    adaptations

    Histograms and Boxplots
    This lesson, created for an introductory ecology course, focuses on helping novice R users to import a data file, apply base R plotting functions, and use R Markdown to generate a reproducible report.

    Keywords: RStudiodata visualizationSwirl

    1355

    views

    590

    downloads

    0

    comments

    0

    adaptations

    Fitting Exponential and Logistic Growth Models to Bacterial Cell Count Data
    In this activity, students will model a noisy set of bacterial cell count data using both exponential and logistic growth models. For each model the students will plot the data (or a linear...

    Keywords: modelingdata analysislinear regressiongraphingExponentsoptimizationcalculusInterpreting GraphsFunctionsqbccCellular and Molecular BiologyChoosing modelsUnderstanding ratesConcepts in Statisticsmeasurementsmanipulating equationscreating graphsExponential and Logarithmic Functionsinterpreting tables

    2012

    views

    2544

    downloads

    1

    comments

    0

    adaptations

    Calling Bullshit Bates College DCS 105 RByte Slides
    This slide deck is a mix of in-class participation and coding activities which aims to formalize understanding of code.

    Keywords: RIntroductorybatescolabDCS 105Calling Bullshit

    185

    views

    45

    downloads

    0

    comments

    0

    adaptations

    Module M.5 Linear mixed-effects models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    514

    views

    205

    downloads

    0

    comments

    0

    adaptations

    Module M.8 Survival analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    416

    views

    159

    downloads

    0

    comments

    0

    adaptations

    Module M.6 Generalized linear models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    486

    views

    172

    downloads

    0

    comments

    0

    adaptations

    Module M.4 Simple linear regression analysis
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

    812

    views

    421

    downloads

    0

    comments

    0

    adaptations

    Uninhibited Growth of Cells
    In this activity, students will explore the concept of binary fission, generation time, and bacterial growth curves, with an emphasis on the log phase. Students will use semi-log graphs and linear...

    Keywords: graphingexponential growthMicrobiology Educationmicrobiologybacteriagrowth rateUndergraduate STEM educationCommunity College Educationqbccmanipulate equationsCellular and Molecular BiologyCreate graphsInterpret graphsbinary fissionsemi-log graphlinear graphgrowth curvecreating graphsExponential and Logarithmic Functions

    920

    views

    1181

    downloads

    0

    comments

    0

    adaptations

    Diversity Indices: Simpson's D and E
    This module introduces Simpson's diversity index in the context of understanding how to mathematically measure the species diversity in a community. It is intended for an introductory biology...

    Keywords: ecologydiversityFunctionsOpenStaxdiversity index

    1301

    views

    950

    downloads

    0

    comments

    0

    adaptations

    Estimating Tree Heights: Right Triangle Trigonometry
    This module introduces basic trigonometry calculations in the context of understanding tree height calculations. It is intended for an introductory biology audience.

    Keywords: ecologyTrigonometryTrigonometric Functions

    984

    views

    198

    downloads

    0

    comments

    0

    adaptations

    Sizes of Organisms: The Surface Area to Volume Ratio
    This module introduces surface area-volume ratio in the context of understanding the limits or constraints on organism size. It is intended for an introductory biology audience.

    Keywords: RatiosstructureSurface AreabiomechanicsGeometryFunctionsVolumeOpenStax

    1410

    views

    340

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search