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    REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
    Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: geneticsstatisticsdata analysisgraphingRStudioVideoexperimental designR programming languagemicrobiomesstudent researchinterdisciplinary educationlimnologyeco-informaticsresearch in the classroomtidyverseWorking with datasetsREMNet

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    Evaluating the potential for immune escape: how likely is an antibody to protect against a specific SARS-CoV-2 variant?
    Commercial antibodies to the SARS-CoV-2 spike protein have been successfully used to treat people with COVID-19. Unfortunately, as the SARS-CoV-2 virus evolves, new variants have appeared that can...

    Keywords: course based undergraduate research experiencesBLASTmolecular modelingSARS-CoV-2antibodyNextstrainiCn3DSequence alignmentStructure alignment

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    Evaluating the potential for immune escape: how likely is an antibody to protect against a specific SARS-CoV-2 variant?
    Commercial antibodies to the SARS-CoV-2 spike protein have been successfully used to treat people with COVID-19. Unfortunately, as the SARS-CoV-2 virus evolves, new variants have appeared that can...

    Keywords: course based undergraduate research experiencesBLASTmolecular modelingSARS-CoV-2antibodyNextstrainiCn3DSequence alignmentStructure alignment

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    Mapping Specimen Occurrence Data in QGIS
    Use digitized natural history collection occurrence data from the Global Biodiversity Information Facility (GBIF) to map the distribution of the beaver in the state of Oregon from 1800-2020 using QGIS

    Keywords: natural history collectionsspecies distributionscourse-based research experiences (CUREs)digitized natural history collectionsQGIS

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    REMNet Tutorial, R Part 3: Creating Alpha Diversity Plots in R 5.2.19
    Video on creating alpha diversity plots in R from the Research Experiences in Microbiomes Network

    Keywords: VideoMicrobiology EducationR programming languagemicrobiomesCoastal wetlandsmanagementnortheastsea-level risesalt marshresearch in the classroomREMNeturban microbiomes

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    Visualizing Global CO2 Emissions
    Using CO2 emissions data, students will learn how to visualize data with Tableau Public. The teaching materials are suitable for upper-level undergraduate courses on data analysis and research...

    Keywords: data visualizationResource Typeclimate change dataTableau

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    A CURE in traits and species distributions: Reproductive modes, range sizes, and natural history collections
    This course-based undergraduate research experience (CURE) focuses on developing hypotheses about how traits influence the range sizes of species. Topics with substantive content include symbioses,...

    Keywords: Evolutionbiostatisticsecologynatural history collectionsSymbiosisspecies distributionsherbariumplant functional traitsLichenReproductive biologyAppalachian mountains

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    Analyzing Data on Behavioral and Immunological Effects of Inflammation in Mice
    In this activity, students will learn about behavioral and immunological responses to a bacterial infection. The activity emphasized the host’s responses rather than bacterial manipulation of the...

    Keywords: Vision and Changedata analysisImmunologybehaviorphysiologyinflammationinterdisciplinary educationAntigenmouseImmunoReachSicknessleukocyteneutrophilLipopolysaccharideacute phase response

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    Introduction to Data Management and Metadata using NEON aquatic macroinvertebrate data
    This lesson focuses on understanding metadata, the data about the data, using aquatic macroinvertebrate abundance and species information from a variety of NEON sampling locations.

    Keywords: data managementSpreadsheetmetadata

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    Atlas of Black Scholarship for Inclusive and Racially Diverse STEM Curricula – Volume I
    The contributions of Black scientists to the advancement of STEM are poorly represented in course materials. Here, we provide an Atlas of Black Scholarship to help Life Sciences and Chemistry...

    Keywords: BLACK SCIENTISTS IN STEMRACIALLY-RESPONSIVE PEDAGOGYBIOLOGY AND CHEMISTRY EDUCATIONDIVERSITY IN STEM CURRICULUM

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    Too much of a good thing? Exploring nutrient pollution in streams using bioindicators
    Students use data on nitrogen and phosphorus levels in streams and macrobenthic insect biodiversity to consider issues of nutrient pollution and stream health while learning to filter, summarize,...
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    Data from: Agent-based and Individual-based Modeling: A Practical Introduction, Chapter 5, Exercise 10 [Elevation]
    Supplemental data for ABM

    Keywords: elevationChapter 5exercise

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    Mysterious Occurrences: Representation, Resiliency, and Redundancy in Native Plant Populations
    Meet Dr. Rachel Hackett, a conservation plant biologist at the Michigan Natural Features Inventory.  We learn about Rachel's job and the restoration of threatened and endangered species. Rachel...

    Keywords: digital resourcesendangered speciesconservation sciencePlant Resilienceplant biodiversitydata skills

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    Environmental Pollution & Public Health (Project EDDIE) used in an introductory Environmental Challenges course
    Environmental health is a field of study within public health that is concerned with human-environment interactions, and specifically, how the environment influences public well-being. In this...

    Keywords: public healthProject EDDIEpollution

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    Constructing Phylogenies using Herbarium Specimens
    This lab is intended as an introduction to a plant systematics course. Students work in groups of two to apply what they have learned about plant structures to develop a character matrix based on a...

    Keywords: botanyphylogenyherbariumdistance learningPlant systematicscharacter matrix

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    Intro to Data Types and Graphing Lab
    This is the third lab in an Introductory Physical Geography/Environmental Studies course. It introduces students to different data types (qualitative vs quantitative), basic statistical analyses...
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    Investigating human impacts on stream ecology: locally and nationally
    This module is a modification of the Nuding and Hampton module in TIEE Volume 8. This modified module includes data from Alaska and is modified to be completed as an asynchronous lab in an online...

    Keywords: aquatic macroinvertebratesAlaskaStream ecologynutrient pollutionHuman Impacts of Ecosystemsecological monitoringasynchronous learning

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    The Importance of Street Trees and Urban Avifauna: A lesson exploring the relationship between urban forest and foraging birds
    This module examines the relationship between street trees, urban avifauna, and socioeconomic gradients in the highly urbanized county of Los Angeles, California. Using edited data from a published...

    Keywords: conservationBiodiversityurbanizationGeneralized linear modelsavifaunaurban forestsocioeconomicsstreet treesnegative binomial regression

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    Impact of Warming on Tidal Wetlands
    This lesson uses a t-test and ANOVA to determine if higher temperatures will have a significant impact on change in mangrove height, change in belowground biomass, and change in surface elevation...

    Keywords: climate changesea-level risesalt marshTidal WetlandElevation ChangeMangrove Forest

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    Climate change and Strawberries: A real-life problem-based activity for teaching ANOVA
    This is a real-life lab activity for teaching ANOVA using Problem-Based Learning and formatted for one-day (JMP or R) or two-day (JMP) implementations.

    Keywords: climate changeProblem based learningANOVAplant sciencetwo-way ANOVA

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