You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Introduction to R with Biodiversity Data
    Students will learn R basics while downloading biodiversity data from multiple data repositories. This module will walk students through installing R, navigating R,writing reproducible scripts in...
    2850

    views

    1486

    downloads

    0

    comments

    0

    adaptations

    Ecological Forecasting Repository of Online Educational Resources
    This pdf provides a list of over 100 educational resources related to tools and skills related to ecological forecasting.

    Keywords: statisticsvideosecologymodel buildingmodulespythonecological forecastingonline course materialcode repositoriesonline textbooksbasics of Rdata sourcesdata skillsforecast cycleapplying forecastsdecision science

    1092

    views

    321

    downloads

    0

    comments

    0

    adaptations

    Quantifying The Drivers and Impacts of Natural Disturbance Events – The 2013 Colorado Floods
    This lesson focuses on ways that scientists identify and use data to understand ecological disturbance events using data from five public datasets. The main lesson focused on interpretation of...

    Keywords: ecologyundergraduate education

    1261

    views

    857

    downloads

    0

    comments

    0

    adaptations

    Genetic Code
    This Excel workbook allows the user to recreate the steps in breaking the genetic code. The user enters the sequence of repetitive synthetic mRNA strands, which are translated in vitro to produce...

    Keywords: mRNAgenetic code

    109

    views

    34

    downloads

    0

    comments

    0

    adaptations

    Writing Clean Code in R Workshop
    When working with data, you often spend the most amount of time cleaning your data. Learn how to write more efficient code using the tidyverse in R.

    Keywords: data analysisdata typesdata visualizationdata scienceearth scienceR programming languageremote sensingGeographic Information System (GIS)data science educationcomputer programmingwildfireearth analytics

    1700

    views

    405

    downloads

    0

    comments

    0

    adaptations

    Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    Keywords: modelingcitizen sciencehypothesis testingdata scienceclimate changeR programming languageBiodiversityplant animal interactionsinquiry-based learningspecies distributionseco-informatics

    1448

    views

    3158

    downloads

    0

    comments

    0

    adaptations

    Are you teaching biostatistics with R? Suggestions to help you as work with your students.
    Teaching students how to code and analyze data in R is important for the fields of biology and ecology. Olivia Tabares and the Ecological Forecasting Education Working Group created this resource...

    Keywords: biostatisticsecologybiologyR code

    874

    views

    293

    downloads

    0

    comments

    0

    adaptations

    An Introduction to Biodiversity Databases and Specimen Images
    In this module, students will be introduced to some biodiversity data resources and how to search for and download herbarium specimen images. They will be asked to think critically about the...

    Keywords: data in the classroombiodiversity informaticsnatural history collection

    1796

    views

    699

    downloads

    0

    comments

    0

    adaptations

    Examining human impacts on tusk evolution in elephants using authentic research data using Serenity
    In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...
    1699

    views

    1073

    downloads

    0

    comments

    0

    adaptations

    Calling Bullshit Bates College DCS 105 RByte Slides
    This slide deck is a mix of in-class participation and coding activities which aims to formalize understanding of code.

    Keywords: RIntroductorybatescolabDCS 105Calling Bullshit

    203

    views

    50

    downloads

    0

    comments

    0

    adaptations

    Pesticide-Driven Bee Mortality: An Introduction to Survival Analysis in R
    In this lesson, students will receive an introduction to survival analysis in R utilizing data on bee mortality caused by pesticide exposure. In their code, students will assess survivability,...

    Keywords: chi-squaredsurvivalbeespesticidesRoundupsurvival analysissurvival plotsherbicides

    1102

    views

    533

    downloads

    0

    comments

    0

    adaptations

    A Potential Novel Ecosystem Service: Seagrass Meadows Reduce Disease in Nearby Corals
    In this lesson, students will receive an introduction to Poisson Generalized Linear Mixed Models in R utilizing data on coral diseases. In their code, students will assess if seagrass status has an...

    Keywords: environmental scienceseagrassecosystemcoral reefsEcosystem Services

    612

    views

    618

    downloads

    0

    comments

    0

    adaptations

    Are you learning R? Suggestions to help you as you learn.
    Learning how to code and analyze data in R is an important skill. Olivia Tabares and the Ecological Forecasting Education Working Group created this resource to encourage individuals who are...

    Keywords: R code

    637

    views

    151

    downloads

    0

    comments

    0

    adaptations

    Home sweet home for warblers: Graphing and Analysis using R
    This resource expands on the Data Nugget "Trees and bushes, Home Sweet Home for Warblers". The analyses and graphing is done in R and there are questions that ask about the management implications.

    Keywords: graphingCommunity Ecologydata interpretationR software

    904

    views

    594

    downloads

    0

    comments

    0

    adaptations

    Digital Herbarium Lab with RStudio: Are shifting abundances of native species detectable over time?
    This 2- to 3-hour lab activity introduces sophomore-level students to digitized herbarium collections, R-coding, and potential reasons for shifting abundances in native and non-native plant species...

    Keywords: data analysistool:rstudionatural historyplant biologyinvasive plantsherbariumnative plantsdigitized natural history collectionsR code

    1417

    views

    942

    downloads

    0

    comments

    0

    adaptations

    Data Management in Excel and R using National Ecological Observatory Network's (NEON) Small Mammal Data
    Students use small mammal data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by re-organising excel sheets...

    Keywords: codingR Markdowndata managementggplot2spreadsheetssmall mammals community dynamicsNEONResource TypeNational Ecological Observatory NetworkR softwaredplyr

    1575

    views

    1569

    downloads

    0

    comments

    0

    adaptations

    Coding Club: A Positive Peer-Learning Community
    Free and self-paced tutorials and courses for learning to code out of the University of Edinburgh

    Keywords: statisticsRecologydata visualizationcodingenvironmental sciencepythonjavascript

    1547

    views

    220

    downloads

    0

    comments

    0

    adaptations

    Exploring the population dynamics of wintering bald eagles through long-term data using R
    The purpose of this modification was to take the analyses that were done in Excel and have the students perform them using R. Students were not given any R code for this activity, as R code was...

    Keywords: Resources @ ESA - TIEEcase studyR programming languagepopulation ecologyendangered speciesconservation biologymigration ecologyggplot2

    1524

    views

    1376

    downloads

    0

    comments

    0

    adaptations

    Investigating human impacts on stream ecology: Intro to R
    This resource uses the Human Impact on Stream Ecology data set, background and questions and provides students an very general introduction to using R. Students perform basic summary statistics and...

    Keywords: graphingdata visualizationR programming languagedescriptive statisticsundergraduate environmental science

    1555

    views

    1127

    downloads

    0

    comments

    0

    adaptations

    Sample NetLogo Code of Bacterial Growth
    Each NetLogo file is a sequential version of the final bacterial growth model produced in the Bacterial Growth Tutorial. These are to be used as checks to one's understanding alongside the tutorial.
    1142

    views

    1899

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search