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    Biochemistry Take Home Exam - Alternative Assessment
    This take-home exam part has several creative activities that students can choose from to demonstrate their mastery of concepts in my one-semester General Biochemistry survey course. In addition...

    Keywords: BiochemistryInclusive teachingAlternative Assessmenttake home exam

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    Exploring the Application of Genetic Concepts to the Process of Disease in a Pathophysiology Course for Undergraduate Nursing Students
    Poster on incorporating genetics concepts related to human disease into nursing courses presented at the 2019 BioQUEST & QUBES Summer Workshop
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    Coding Club: A Positive Peer-Learning Community
    Free and self-paced tutorials and courses for learning to code out of the University of Edinburgh

    Keywords: statisticsRecologydata visualizationcodingenvironmental sciencepythonjavascript

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    Spreadsheet Data Analysis Terms and Shortened Tutorial 4
    Introductory students are asked to learn terms for descriptive statistics and complete a matching exercise. Tutorial 4 was shorted to just the full calculations of t values.

    Keywords: Scientific ProcessStatistics and MathScientific Methodology

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    Calculus, Zombies, Community, and QUBES
    Presentation discussing approaches to determining the content and delivery structure for quantitative integration into the curriculum of foundational courses in both statistics and calculus for the...

    Keywords: math bio edzombiesmath confidenceumaine

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    Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts
    Introductory physics courses are required for many programs in the life sciences, yet traditional curricula fail to help students meaningfully connect physical concepts with biological...

    Keywords: quantitative biologyHIVmultiplicity of infectionPoisson DistributionPhysics for biologists

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    Student-Driven Design-and-Improve Modules to Explore the Effect of Plant Bioactive Compounds in Three Model Organisms
    Engaging and supporting introductory level students in authentic research experiences during required coursework is challenging. Plant bioactive compounds attract students' natural curiosity as...

    Keywords: statisticsLabCUREInquiryresearch skillscaterpillardaphniadrugsscience process

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    RNAseq data analysis using Galaxy
    This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

    Keywords: LabbioinformaticsNCBImappingUndergraduateworkflowNIBLSEGalaxyRNAseqgene expressionAdvancedExtended ProjectArabidopsisC1. Role of bioinformaticsC2. Computational conceptsC3. Statistical conceptsC5. Data retrievalIncubated at NIBLSEdifferentially expressed genes

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    Bioinformatics / Neuroinformatics
    This module is a computer-based introduction to bioinformatics resources.  This easy-to-adopt module weaves together several important bioinformatic tools so students can grasp how each is used in...

    Keywords: bioinformaticsNIBLSEImageJquantitative trait locusQTL

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    Statistical Exploration of Climate Data
    In this module the students will learn some basic concepts in statistical thinking about data, with emphasis on exploratory data analysis.

    Keywords: modulelinear regressioncase studyclimate datamoving averagesin-class activity

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    Teaching R with Swirl
    Session presentation on using Swirl, an interactive platform for learning and teaching R in the R console

    Keywords: Rdata analysisprogrammingSummer Workshop 2018Swirl

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    The Great Petunia Carnage of 2017: A Clicker Case Study Using Petunias to Describe the Effect of Genetic Modification on the Biochemistry of Flower Color and Phenotype in Plants
    In this single class period case study, students examine the difference between genotype and phenotype by studying the mechanisms by which commercially available petunias have been bred to have...

    Keywords: case studyGenetic ModificationsBiochemistry of Flower ColorGMO regulationsGenotype-Phenotype Connections

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    An Introduction to Statistical Learning: with Applications in R
    This book provides an introduction to statistical learning methods and is aimed for upper level undergraduate students, masters students and Ph.D. students in the non-mathematical sciences.

    Keywords: linear regressiontextbookclassificationcourseclustering coefficientR programming languagestatistical learningmachine learninglogistic regressionresamplingmodel selectionGeneralized additive modelsdecision treesprincipal components analysisMOOCResources @ QUBES - Teaching & Reference

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    Using Climate of Change in a Non Majors Sustainability Course
    The Climate of Change module was implemented in my Introduction to Environmental Sustainability course. We concluded the semester with an in depth examination of climate change, which includes how...
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    Understanding Protein Domains: A Modular Approach
    An understanding of protein structure, function, and interaction is central to biochemistry. One angle into this topic is to engage students in considering protein domains as modules that develop...

    Keywords: Protein Structure

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    The Mystery of the Missing Martens
    National Center for Case Study Teaching in Science- this interrupted case study introduces basic modeling to investigate a decline in an American marten population on an island in Southeast Alaska.

    Keywords: modelingsurvivaldata analysisvital ratessurvivorshippopulation ecologyage structurefecundityWildlife Biologymodellingmartensbirth ratelife table

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    Using gross parasites to sneak even grosser equations into the introductory biology classroom
    This was an oral presentation at the 2015 Annual Meeting of the American Society of Parasitologists in Omaha, NE.

    Keywords: ParasitologyAmerican Society for Parasitologists

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    Teaching Biodiversity with Museum Specimens in an Inquiry-Based Lab
    In response to the growth of biology datasets and broad efforts to digitize data, an increasingly important skill for science students is the management and analysis of large datasets. We designed...

    Keywords: data analysisnatural historyphylogenyBiodiversitymammalsAllen's RuleBergmann's Ruleecogeographymuseum research

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    Biobyte 1 - Where are we in the data science landscape?
    This short activity can be used to introduce the NAS Data Science For Undergraduates report's definition of data acumen and engage participants in a self assessment of how they connect with those...
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    Dynamic Daphnia: An inquiry-based research experience in ecology that teaches the scientific process to first-year biologists
    This authentic research experience lesson teaches the core concept of systems and the competencies of quantitative reasoning, communication, and the ability to apply science. The research is...

    Keywords: statisticsecologyscientific methodexperimental designAbiotic and Biotic FactorsDependent and Independent Variables

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