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    Exploring Marine Primary Productivity with Descriptive Statistics and Graphing in Excel
    In this activity, students use real water chemistry data and descriptive statistics in Excel to examine primary productivity in an urban estuary of the Salish Sea. They will consider how actual...

    Keywords: statisticsecologydataExcelgraphingBiochemistryOceanographymarine ecosystemsmarine ecologydescriptive statisticslong-term datasetsmarineMicrosoft Excelmarine biologyplanktonOutliersMarine ScienceqbccUsing ExcelphytoplanktonCreate graphsInterpret graphsConcepts in Statisticslarge datasetexplaining statisticsusing statisticsPacific NorthwestSalish Seaprimary productivitywater chemistryestuarygraphing in Excelformulas in Excelchlorophylltime-series plotsocean

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    Exploring Health Inequities and Redlining
    For this assignment, students will investigate relationships between historic redlining data and modern statistics of human health.

    Keywords: diseasehealthsocial justicepublic healthData science for Biologistredliningchronic diseasesocial vulnerability

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    Exploring Marine Primary Productivity with Descriptive Statistics and Graphing in Excel
    In this activity, students use real water chemistry data and descriptive statistics in Excel to examine primary productivity in an urban estuary of the Salish Sea. They will consider how actual...

    Keywords: statisticsecologydataExcelgraphingBiochemistryOceanographymarine ecosystemsmarine ecologydescriptive statisticslong-term datasetsmarineMicrosoft Excelmarine biologyplanktonOutliersMarine ScienceqbccUsing ExcelphytoplanktonCreate graphsInterpret graphsConcepts in Statisticslarge datasetexplaining statisticsusing statisticsPacific NorthwestSalish Seaprimary productivitywater chemistryestuarygraphing in Excelformulas in Excelchlorophylltime-series plotsocean

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    Using the IEDB to Predict Proteasomal Cleavage Events and T-cell Epitopes
    Research experiences provide a valuable view into the world of science and a great way to explore new fields and careers while developing critical thinking skills. The development and maintenance...

    Keywords: biologydatabaseImmunologydata sciencebioinformaticsBiotechnologyt-cellengineeringantibodyBioengineeringAntibody EngineeringlymphocytesProteinNetChopepitopeIEDBB-cellProteasomeProteasomal Cleavage

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    Fitting Exponential and Logistic Growth Models to Bacterial Cell Count Data
    In this activity, students will model a noisy set of bacterial cell count data using both exponential and logistic growth models. For each model the students will plot the data (or a linear...

    Keywords: modelingdata analysislinear regressiongraphingExponentsoptimizationcalculusInterpreting GraphsFunctionsqbccCellular and Molecular BiologyChoosing modelsUnderstanding ratesConcepts in Statisticsmeasurementsmanipulating equationscreating graphsExponential and Logarithmic Functionsinterpreting tables

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    Snapshot Serengeti Faculty Mentoring Network, Summer 2022
    The goal of our summer 2022 FMN was to develop a client-side interactive dashboard that allowed students to visualize and analyze data from the Snapshot Serengeti camera-trap research project.

    Keywords: Faculty Mentoring NetworkinteractiveSerengeti

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    2018-Van_Kinh Nguyen-Esteban_Hernandez-Vargas-Parameter estimation in mathematical models of viral infections using R
    Mathematical modeling has played a central role to understand mechanisms in different viral infectious diseases. In this approach, biological-based hypotheses are expressed via mathematical...

    Keywords: simulationdiseasevirusviral infection

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    GEA Introductory lesson on RNA-Seq
    This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....

    Keywords: data sciencebioinformaticsGenome BrowserRNAseqhigh throughput sequencingmRNAAlignmentNCBI Sequence Read Archive

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    Mosquito Vector Ecology of the East Coast using NEON
    This data module examines the relationship between mosquito vector ecology and climate across the east coast of the United States. The module is designed to merge core concepts in ecology with...
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    Using: "Winter Is Coming! Can you Handle the Freeze?" In an Intro BIO lecture
    I use Team Based Learning in this course, students are in permanent groups and work together on Challenge Questions each class after I give a short lecture. This Nugget was used in place of regular...

    Keywords: graphing

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    2011-Mandal-EtAl-Mathematical models of malaria
    The first aim of this article is to develop, starting from the basic models, a hierarchical structure of a range of deterministic models of different levels of complexity. The second is to...

    Keywords: epidemiologytransmissionhost-parasitemalariaRoss model

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    Waking up Anna - Adaptations and Conversion to Mol*
    This case focuses on understanding the molecular basis of Anna's sleeping disorder and its treatment. The adaptations addressed question clarity and reformatting to use Mol*.

    Keywords: sleepmolecular visualization and analysisPDBMolecular Case StudyGABAMolCaseNetMol*MolStarProtein visualizationFlumazenil

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    Waking up Anna
    This case focuses on understanding the molecular basis of Anna's sleeping disorder and its treatment.

    Keywords: sleepmolecular visualization and analysisPDBMolecular Case StudyGABA

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    Introduction to Genome Browser: What is a Gene?
    In this module, we will use a web-based visualization tool called a Genome Browser to explore the structure of a eukaryotic gene, and obtain a basic understanding of how this information is...
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    A Pipeline in Paradise, Part 1: Learning the Relevant Science
    This case requires students to integrate information across the following five “knowledge domains” to develop a baseline understanding of the problem.

    Keywords: case studysocio-environmental data

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    Cancer Genetics and an Interview with a Deaf Biomedical Researcher
    In this lesson, learners will learn about cancer genetics and understand and interpret graphs showing quantitative trait locus (QTL) data, survivor curve data, and other genetics data. Then,...

    Keywords: graph interpretationfmnDeaf EducationBioGraphIrepresentation in STEMBioGraphI graph InterpretationDeaf representation in STEM

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    Stream Discharge Module- Beck Modification (Project EDDIE)
    In this module, students use data from the United States Geologic Survey to assess changes in stream discharge with time, calculate flood frequency, and see the effects of urbanization and flood...

    Keywords: floodsProject EDDIEurbanizationstreams

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    Quantitative biology: how educators that "buy-in" demonstrate greater productivity in teaching scholarship
    Poster presented at the University of Pittsburgh undergraduate research symposium on the impact of buy-in on productivity in faculty mentoring networks.

    Keywords: faculty mentoring networks

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    Analyzing Data on Behavioral and Immunological Effects of Inflammation in Mice
    In this activity, students will learn about behavioral and immunological responses to a bacterial infection. The activity emphasized the host’s responses rather than bacterial manipulation of the...

    Keywords: Vision and Changedata analysisImmunologybehaviorphysiologyinflammationinterdisciplinary educationAntigenmouseImmunoReachSicknessleukocyteneutrophilLipopolysaccharideacute phase response

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    Splicing it Together: Using Primary Data to Explore RNA Splicing and Gene Expression in Large-Lecture Introductory Biology
    At the heart of scientific ways of knowing is the systematic collection and analysis of data, which is then used to propose an explanation of how the world works. In this two-day module, students...

    Keywords: gene regulationtranscriptiongene expressioncentral dogmarepressoralternative splicingmRNA processingActivatorTranscription factors

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