You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Exploration of the Human Genome by Investigation of Personalized SNPs
    Students often shy away from tedious bioinformatics approaches to exploring their genomes. However, in our expanding digital world these skills are some of the most relevant and valuable. To...

    Keywords: UCSC genome browsersingle nucleotide polymorphismGenome wide association studiesGenomic organization

    1862

    views

    839

    downloads

    0

    comments

    0

    adaptations

    Using Undergraduate Molecular Biology Labs to Discover Targets of miRNAs in Humans
    Incorporating authentic research experiences into undergraduate labs, while shown to be particularly effective at engaging and retaining students in STEM majors, can be difficult to accomplish...

    Keywords: gene regulationmicroRNAsgene expression

    1875

    views

    549

    downloads

    0

    comments

    0

    adaptations

    Why do Some People Inherit a Predisposition to Cancer? A small group activity on cancer genetics
    Before undergraduate students take a genetics course they generally know cancer has a genetic basis and involves the proliferation of cells; however, many are uncertain about why only a subset of...

    Keywords: cancerInheritance patternsProbability calculationProto-oncogeneTumor Suppressor Gene

    1724

    views

    440

    downloads

    0

    comments

    0

    adaptations

    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    Next-generation sequencing is radically changing the study of biology, but there are currently few resources aimed at teaching the required laboratory and data-analysis skills to undergraduate...

    Keywords: statisticsbioinformaticsRNAseqgene expressioncomputer programming

    3341

    views

    557

    downloads

    0

    comments

    0

    adaptations

    You and Your Oral Microflora: Introducing non-biology majors to their “forgotten organ”
    With limited time available for laboratory activities, introductory science courses for non-science majors typically use the laboratory period to reinforce material that was previously presented...

    Keywords: bacteriamicrobiomeBLASTmicrobesDNA replicationPolymerase chain reaction (PCR)

    2183

    views

    273

    downloads

    0

    comments

    0

    adaptations

    The Case of the Missing Strawberries: RFLP analysis
    While solving the fictional mystery of the missing strawberries, students are engaged in a guided-inquiry lesson featuring small-group and class discussions, hands-on activities, and laboratory...

    Keywords: process of scienceDNAforensicsgel electrophoresisMolecular genotypingRestriction endonucleaseRestriction enzymeRestriction fragment length polymorphismRFLP

    2537

    views

    616

    downloads

    0

    comments

    0

    adaptations

    Sex-specific differences in Meiosis: Real-world applications
    In traditional classrooms, students are typically presented with facts that they are asked to memorize and recall during an exam.  The rapid explosion of available scientific facts in recent...

    Keywords: meiosisReproductionAneuploidyGameteNon-disjunctionOocyteSpermTrisomy

    1524

    views

    452

    downloads

    0

    comments

    0

    adaptations

    Homologous chromosomes? Exploring human sex chromosomes, sex determination and sex reversal using bioinformatics approaches
    Constructing a robust understanding of homologous chromosomes, sex chromosomes, and the particulate nature of genes is a notoriously difficult task for undergraduate biology students. In this...

    Keywords: bioinformaticsautosomehomologous chromosomeshomologous recombinationsex chromosomesex determinationsex reversal mutations

    3193

    views

    655

    downloads

    0

    comments

    0

    adaptations

    Does it pose a threat? Investigating the impact of Bt corn on monarch butterflies
    Aspiring scientists know that a hallmark of science is that experiments are repeatable and testable.  However, students do not often get opportunities to explore the replicability of...

    Keywords: ecologyCommunity EcologyBt cornGenetic modificationMonarch butterflies

    1737

    views

    413

    downloads

    0

    comments

    0

    adaptations

    Why Meiosis Matters: The case of the fatherless snake
    A compelling reason to learn something can make all the difference in students’ motivation to learn it.  Motivation, in turn, is one of the key attitudes that drives learning.  This story...

    Keywords: meiosismitosissex determinationAsexual reproductionParthenogenesis

    8795

    views

    1132

    downloads

    0

    comments

    0

    adaptations

    HITS: A network to create inquiry-based case studies that make high-throughput approaches and discovery accessible
    Poster on the work of the NSF-funded High-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students (HITS) Research Coordination Network. Presented at the 2021 BIOME Institute.

    Keywords: case studieshigh-throughputHITSHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students2021 BIOME

    904

    views

    261

    downloads

    0

    comments

    0

    adaptations

    Genome Hunters: A Quantitative Biology Course-Based Undergraduate Research Experience (CURE)
    Poster outlining the process of designing, implementing, and assessing a new quantitative biology CURE course series. Presented at the 2021 BIOME Institute.

    Keywords: quantitative biologycourse-based undergraduate research experienceCURE2021 BIOME

    1324

    views

    654

    downloads

    0

    comments

    0

    adaptations

    Using Bioinformatics Activities to understand the Past and Present of SARS-CoV2
    We have designed a Bioinformatics activity that uses tools to identify the origins and mutations in the novel SARS-CoV2 strains.
    1800

    views

    1134

    downloads

    0

    comments

    0

    adaptations

    Using Bioinformatics to Understand Genetic Diseases: A Practical Guide
    This Practical Guide outlines a number of basic bioinformatics approaches that can be used to understand the molecular basis of genetic diseases.
    859

    views

    182

    downloads

    0

    comments

    0

    adaptations

    MiniWorkshop Follow-Up October 2, 2020
    A follow up to our mini workshop of August 14, 2020. Further information about the python pipeline for HGT and the new cytoscape lesson.

    Keywords: Bioinformatics Education

    1042

    views

    1344

    downloads

    0

    comments

    0

    adaptations

    Ethics in Synthetic Biology
    This collection of five activities provide students with an introduction to thinking about ethical concerns in human genome synthesis, gene editing, metabolic engineering, and synthetic genomes.

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

    1024

    views

    222

    downloads

    0

    comments

    0

    adaptations

    Mini-Workshop August 14, 2020
    We reviewed the materials available on Genome Solver (other lessons here) and described our new python pipeline for examining horizontal gene transfer and a new synteny lesson in detail.

    Keywords: Bioinformatics Education

    1197

    views

    1887

    downloads

    0

    comments

    0

    adaptations

    Introducing PHAGES Students to Primary Literature
    The ‘Introducing PHAGES Students to Primary Literature’ set of teaching resources offers faculty 2 distinct sets of teaching resources for introducing students to scientific literature in the...
    1253

    views

    1658

    downloads

    0

    comments

    0

    adaptations

    Exploring Functions for Common Phage Proteins
    This resource is designed to help students better understand the functions of common structural and enzymatic phage proteins, and to relate these functions to phage structure using electron...
    1108

    views

    1776

    downloads

    0

    comments

    0

    adaptations

    Student and Faculty Tools for Generating High-Quality Phage Annotations
    Phage genome annotation requires collaboration between faculty and their student research team. This set of resources provides tools to assist both students and faculty in the evaluation and...
    1054

    views

    929

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search