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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Human Activity and Soil Hostility
    The composition of soil can be broken down to a mixture of both abiotic and biotic matter. This composition can include animal waste, minerals, water, and even air. The complex nature of soil...

    Keywords: soil science

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    Serenity now! Keep calm and do science with real data in the classroom
    Session on using real data in the classroom with Serenity, a platform-independent browser-based interface to data science tools for the classroom.

    Keywords: data scienceBIRDDtool:serenitySummer Workshop 2018Galapagos

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    Using primary literature to teach data literacy
    Presentation by Bridget Conneely made as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of American...

    Keywords: Ecological Society of America

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    Aquatic ecology with Diana Hitchen
    Our LWS interview with aquatic ecologist for the Great Basin Institute and Bureau of Land Management, Diana Hitchen.
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    Serenity now! Keep calm and do science with real data in the classroom
    Presentation on a free web application currently under development on QUBES called Serenity at the 5th Life Discovery Conference

    Keywords: data sciencetool:serenity5th Life Discovery- Doing Science Education conference (LDC)5th Life Discovery Conference

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    DataCamp
    DataCamp: The Easiest Way to Learn Data Science Online

    Keywords: statisticsRcurriculumdata visualizationdata scienceonline learningcoursemachine learningpythonlab protocol

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    QUBES – A virtual synthesis center catalyzing change in undergraduate quantitative biology education
    Presentation about QUBES given at HHMI Constellation Meeting: Advancing science students mastery of quantitative skills.

    Keywords: quantitative biology education

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    2019-Lorelei_Koss-SIR_Models_Differential_Equations_that_Support_The_Common_Good
    This article surveys how SIR models have been extended beyond investigations of biologically infectious diseases to other topics that contribute to social inequality and environmental concerns.

    Keywords: environmentSIRsocial justiceepidemiccommon good

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    SUSTAINABILITY METRICS AND INDICES
    Sustainability metrics and indices are measures of sustainability, and attempt to quantify beyond the general concept. Though there are disagreements among those from different disciplines (and...

    Keywords: climate changeSustainability Literacy

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    The Human Microbiome Biodiversity in Health and Disease
    The students will analyze the human gut and vaginal microbiomes in healthy and diseased states using diversity of bacteria as determined by 16SrRNA sequence.
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    Social Justice & Community Change QUBES Faculty Mentoring Network 2021
    In this Faculty Mentoring Network we will examine the historical practice of redlining, and how social and economic factors over the last century have created disparities in environmental...

    Keywords: social justiceair qualityBIOME 2020redlining

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    Growing from Tiny Earth: A model for interdisciplinary CUREs at Johnson County Community College
    This resource includes a video that highlights how Tiny Earth is implemented and a poster that shows independent research done by students after participating in the CURE courses.

    Keywords: researchCURECUREs

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    Sequence Similarity Resource Adaptation: Exploring Ebola Virus
    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    Keywords: phylogeneticsbioinformaticsEbolasequencingFASTANCBINIBLSEalgorithmsincubatorsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogram

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    Exploration of the Human Genome by Investigation of Personalized SNPs
    To increase students' interest in their own genomes, this computer-based laboratory lesson is designed to be coupled with the opportunity for the students to be genotyped by the consumer sequencing...

    Keywords: bioinformaticsNIBLSECourseSourcegenomic wide association studiesUCSC genome browsersingle nucleotide polymorphism

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    Bad Cell Reception? Using a cell part activity to help students appreciate cell biology, with an improved data plan and no loss in coverage
    With a veritable myriad of cell parts to cover, it is easy for educators to become locked into marathon presentations that become taxing for both the instructor and the students. While we hope and...

    Keywords: primary literatureprokaryotesCell partsEukaryotesOrganelle functionOrganelles

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    Single Cell Insights Into Cancer Transcriptomes: A Five-Part Single-Cell RNAseq Case Study Lesson
    There is a growing need for integration of “Big Data” into undergraduate biology curricula. Transcriptomics is one venue to examine biology from an informatics perspective. RNA sequencing has...

    Keywords: bioinformaticscancertranscriptomicshigh-throughputData wranglingSingle cell RNA sequencingq

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    A Kinesthetic and Collaborative Activity to Improve Conceptual Understanding of Chemical Equilibrium
    While teaching in large lecture halls, it is challenging even for experienced teachers to hold their students’ attention for the entire class period. Owing to the large enrollment in STEM...

    Keywords: collaborationdemonstrationchemistrykinesthetic learningequilibriumhands-on learning

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    Exploring the City of Biofilms: An Engaging Analogy-Based Activity for Students to Learn Biofilms
    Multicellular biofilms constructed by microbes are key aspects of microbiology with significant implications in various fields, including medicine, environmental science, and biotechnology. While...

    Keywords: bacteriaBiofilmsquorum sensing

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    Responsible and Ethical Conduct of Research: Instruction on Plagiarism
    Helping students understand where they should provide citations in research manuscripts is an essential aspect of training them in the responsible and ethical conduct of research. This Lesson...

    Keywords: citationwritingethicsplagiarismparaphrasequote

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    Debating Conservation: Developing Critical Thinking Skills in Introductory Biology Classes
    Role-playing activities in the classroom promote students’ critical thinking, research, and communication skills. We present an activity where students debate a current controversy in...

    Keywords: Restorationtrophic cascadeecosystem function

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