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    2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
    In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters...

    Keywords: time seriesEvaluation SPLINEgeneleast squaresbifurcation

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    2007-Ramsay-Hooker-Campbell-Cao-Parameter estimation for differential equations-a generalized smoothing approach
    We propose a new method for estimating parameters in models that are defined by a system of non-linear differential equations.

    Keywords: estimating equationfunctional data analysisGauss–Newton methodparameter cascadeprofiled estimationdynamic system

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    1975-Rodda-Sampson-Smith-The One-Compartment Open Model Parameter Estimation
    A new estimation procedure is proposed for estimating the parameters of the simplest pharmacokinetic model, the one-compartment open model.

    Keywords: compartment modelpharmacokineticsnonlinear estimationone compartment model

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    2011-Steven_Desjardins-Remi_Vaillancourt-Ordinary_Differential_Equations_Laplace_Transforms_and_Numerical_Methods_for_Engineers
    This text is packed with worked out presentations, problems, and exercises (with solutions) and MatLab code. There is sufficient detail and attention to topics to more than address interests/needs...

    Keywords: modelingtextbookmatlabengineeringLaplace transform

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    3-043-BallisticModeling-SpongeDart-ModelingScenario
    The goal of this project is for students to develop, analyze, and compare three different models for the flight of a sponge dart moving under the influences of gravity and air resistance.

    Keywords: projectile motionair resistanceballisticsdimensional analysisNewtonian mechanicssponge dartNerf gunNerf dartBuckingham's Theorem

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    3-090-OneSpringMass-ModelingScenario
    We lead students through building a mathematical model for a single mass (bob)-spring system that is hanging vertically. We also lead the students, using data that they collect together with their...

    Keywords: undampedsum of square errorsmass springHooke's Lawoscilationleast-squares approximation

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    6-026-IsleRoyaleModeling-ModelingScenario
    The primary aim of this project is to draw a connection between differential equations and vector calculus, using population ecology modeling as a vehicle.

    Keywords: ecologyoptimizationpredator-preypopulationvector calculusLagrange multipliersleast squaresIslel Royale

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    Grappling with Graphs: New tools for improving graphing practices among biology students
    Poster on gathering information about undergraduate biology students' graphing practices and using this information to guide teaching of graph construction. Presented at the 2021 BIOME Institute.

    Keywords: educationbiologygraphinggraphsundergraduate biology education2021 BIOMEgraph

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    Multiple choice quiz questions for biostatistics
    A set of 157 multiple choice quiz questions for biostatistics courses, organized and searchable by 18 concepts/skills.

    Keywords: quizbiostatistics - general

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    NEON Data in the Classroom: Quantifying Spatial Patterns
    Students build on fundamental concepts of spatial patterns and combine this knowledge with the open-data from the National Ecological Observatory Network to quantify spatial autocorrelation and...

    Keywords: RR Markdownlandscape ecologygroup-neon2018spatial statisticsfractalsrasters

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    Modification of "The Effect of Climate Change on Butterfly Phenology" module by Linton et al.
    This is a modification of the Linton et al. module in TIEE Volume 13. Students use data from digitized museum records of butterfly specimens in a modification with no homework (lab/workshop format)...

    Keywords: ExcelResources @ ESA - TIEEclimate changefmnphenologynatural history collectionsDIGbutterflyinterspecific interactions

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    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...

    Keywords: statisticsR programming languagebioinformaticsNIBLSERNAseqgene expressionCourseSourcecomputer programming

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    The nose knows: How tri-trophic interactions and natural history shape bird foraging behavior. An introduction to statistical analysis in animal behavior research
    Students investigate the role of olfaction and infochemicals on bird foraging behavior through two different quantitative activities where they generate hypotheses, create figures, conduct data...

    Keywords: Resources @ ESA - TIEEforagingfmnanimal behaviorbehavioral ecologyDIGtrophic cascades

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    Dendroclimatology
    Dendroclimatologists can reconstruct climate records further into the past than written records, by examining tree rings. Students "reverse-engineer" this process by considering growth rates of a...

    Keywords: linear regressiongraphingdata visualizationstandardizationclimatetree ringsdendrochronology

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    Scientific Uncertainty
    This video explores what scientists mean when they talk about uncertainty and how it differs from the way this uncertainty is perceived by the public. We start with 2014’s record heat and end up...

    Keywords: videosScience Forwarduncertaintyskepticismcommunicating science

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    Evolution
    This video explores the way evolution happens via natural selection in the context of the microbial world. Viruses and bacteria are discussed. We will see how evolution can be simulated in a...

    Keywords: videosEvolutionNatural SelectionScience Forwardmicrobes

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    Visualization: Quantitative reasoning via image analysis, networks, topology, generative models, and 3D rendering
    Resource from the 2015 BioQUEST Summer Workshop
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    Quantitative reasoning: Interdisciplinary STEM 21st century reasoning modality
    Resource from the 2015 BioQUEST Summer Workshop

    Keywords: stemQuantitative reasoning

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    Designing undergraduate biology curricula to teach skills and knowledge for data-intensive environmental research
    Poster presented at Ecological Society of America Annual Conference 2017.

    Keywords: data literacy

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    2020-Stepien_Kostelich_Kuang-Mathematics Cancer An Undergraduate Bridge Course in Applied Mathematics
    Most undergraduates have limited experience with mathematical modeling. This paper describes a course on the mathematical models of cancer growth and treatment.

    Keywords: differential equationsmodelingundergraduate educationcancertumor

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