You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Visualization: Quantitative reasoning via image analysis, networks, topology, generative models, and 3D rendering
    Resource from the 2015 BioQUEST Summer Workshop
    1150

    views

    57

    downloads

    0

    comments

    0

    adaptations

    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

    Keywords: BLASTmultiple sequence alignmentsequence similarityphylogramZika virusAlgorithmScoring Matrix

    1862

    views

    632

    downloads

    1

    comments

    0

    adaptations

    2011-Brian_Winkel-Sourcing_for_parameter_estimation_and_study_of_logistic_differential_equation
    We present two simulation activities for students to generate real data and several data sources for the purpose of estimating parameters in the logistic differential equation model.

    Keywords: dataparameter estimationparameterlogistic equationsource

    146

    views

    47

    downloads

    0

    comments

    0

    adaptations

    2009-Brian_Winkel-Population_modelling_with_MandMs
    Several activities in which population dynamics can be modeled by tossing M&M’s® candy are presented.

    Keywords: simulationparameter estimationimmigrationdeathdifference equation

    166

    views

    46

    downloads

    0

    comments

    0

    adaptations

    1-047a-CondensationOptimization-ModelingScenario
    We seek to optimize a condensation process which is modeled by a simulation using the random motion of 200 particles in a 50 by 50 square in which a particle bounces off the two vertical and top...

    Keywords: simulationdataoptimizationenergycondensationbest fitcostsum of scquare errors

    335

    views

    293

    downloads

    0

    comments

    0

    adaptations

    Gelin’: Gel Electrophoresis Simulation
    Students will understand how DNA is separated into a fingerprint by using a chromatography activity to simulate gel electrophoresis.

    Keywords: DNAgel electrophoresisdna fingerprintchromatography

    1481

    views

    446

    downloads

    0

    comments

    0

    adaptations

    Data simulation and randomization tests
    A participatory live-coding lesson on simulating data and performing randomization tests on ecological data in R.
    1617

    views

    1443

    downloads

    0

    comments

    0

    adaptations

    1-046-GoingViral-ModelingScenario
    Students participate in a simulation of the spread of a viral disease in the classroom and model the process with a logistic differential equation. The simulation uses random numbers and the entire...

    Keywords: simulationmathematical modeldatalogisticrandom number generatorfittingrandom process

    420

    views

    146

    downloads

    0

    comments

    0

    adaptations

    2007-Exben_Friis-Jensen-Modeling and Simulation of Glucose-Insulin Metabolism
    In this thesis one of the models of diabetes, Bergman’s minimal model is described trough derivation and simulations.

    Keywords: Metabolisminsulin resistanceglucosePID controllerintolerance

    91

    views

    44

    downloads

    0

    comments

    0

    adaptations

    1976-JG-Wagner-Computers in pharmacokinetics
    This is a seminal paper in pharmacokinetics in which the author introduces historic notions and approaches. As can be seen from the abstract there is a variety of material here.

    Keywords: kineticscomputerparametersPharmacologydrugspharmacokinetics

    274

    views

    41

    downloads

    0

    comments

    0

    adaptations

    1-001-MM-DeathAndImmigration-ModelingScenario
    We conduct a simulation of death and immigration, using a small set of "individuals", m&m candies or any two sided object (coin, chips), in which upon tossing a set of individuals we cause some to...

    Keywords: simulationimmigrationdeathSpanishdatsWinkelBrian Winkel

    280

    views

    366

    downloads

    0

    comments

    0

    adaptations

    COVID-19 Spread NetLogo ABM
    This project aimed to utilize agent-based modeling in NetLogo to create a simulation of COVID-19 spread in a traditional college classroom. The model allows for an evaluation of different...

    Keywords: classroomNetLogoagent-based modelingdisease prevention

    365

    views

    90

    downloads

    0

    comments

    0

    adaptations

    Materials for Teaching the SIR Epidemic Model
    This web page contains materials created by faculty of the University of Nebraska-Lincoln Department of Mathematics to teach basic fundamentals of mathematical epidemiology.
    940

    views

    1158

    downloads

    0

    comments

    0

    adaptations

    Diseasebots HEXBUG Lab
    This module explores the effects of host density on contact rates and transmission of pathogens using a hands-on experiment with HEXBUG robots.
    716

    views

    162

    downloads

    0

    comments

    0

    adaptations

    OpenIntro
    OpenIntro was started with one goal in mind: create a free and open-source introductory textbook.

    Keywords: statisticssimulationvideosmodulerandomizationtextbookcurriculumlabsproblem setslecture slidescoursein-class activitylab protocolproblem setPresentation

    1185

    views

    216

    downloads

    0

    comments

    0

    adaptations

    Introduction to Quantitative Biology - Fall 2014 Syllabus
    Syllabus for Introduction to Quantitative Biology taught at the College of William and Mary.

    Keywords: quant biosyllabus

    1006

    views

    200

    downloads

    0

    comments

    0

    adaptations

    Geoscience Methods and Resources for K-5 Pre-Education Majors
    : Exploring Geoscience Methods was an excellent capstone experience for Elementary Education Majors. The class I used this module with was 24 students of various backgrounds and academic...

    Keywords: geneticsvideosQUBESecologyResources @ HHMI - BioInteractiveMathematical Biologycalculusjavaorganismal biologyquantitative biologybioinformaticsneurosciencegenomicscancerSecondaryyoutubemicrobiomeFaculty Mentoring NetworksalamanderCapture mark-recaptureAudience level - Introductory UG - majorsAudience level - Introductory UG - non-majorsecosystemsgenetic basis of diseasebiology of cellshuman reproductionfood chainIntroduction to Modelingrandom number generatorPost-secondaryLower DivisionPossible TasksModeling ProjectBuildCompareEvaluateexponential decayrecursionabsorptionelimination

    1614

    views

    2138

    downloads

    0

    comments

    0

    adaptations

    Learn Biological Sciences and Mathematics through cellular respiration, photosynthesis and primary productivity.
    Photosynthesis is a process by which plants synthesize glucose and oxygen in presence of sunlight through light dependent reactions by utilization of sunlight, water to synthesize oxygen, ATP and...

    Keywords: mathematicssimulationThe Analysis of Biological DataMetabolic Pathwaysprocess of sciencephotosynthesisqbccBiological ScienceshypothesisCellular Respirationprimary productivity

    906

    views

    88

    downloads

    0

    comments

    0

    adaptations

    2016-Lofgren-EtAl-Equations of the End Teaching Mathematical Modeling Using the Zombie Apocalypse
    In this article, we explore several uses of zombie epidemics to make mathematical modeling and infectious disease epidemiology more accessible to public health professionals, students, and the...

    Keywords: simulationinfectious diseasediseaseepidemicZombieWhite Zed

    165

    views

    94

    downloads

    0

    comments

    0

    adaptations

    2015-Peter_Cumber-Waggling pendulums and visualization in mechanics
    This article describes an equation of motion for a waggling pendulum.

    Keywords: resonanceinverted pendulummechanicsdamped pendulum

    92

    views

    50

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search