Text Search:
Applied Filters
    Investigating the Drivers of Western Monarch Decline Using Partial Least Squares Regression
    In this lesson, students will explore the drivers of the western monarch butterfly decline. Students will compare the effects of climate factors and land use factors on the western monarch...
    393

    views

    488

    downloads

    0

    comments

    0

    adaptations

    Striped Bass: A Regulatory Success Story
    This module examines the Maryland striped bass moratorium (1985-1989) as a fisheries management success story. Maryland DNR striped bass young of the year data is utilized for least squares linear...
    1568

    views

    1666

    downloads

    0

    comments

    0

    adaptations

    2015-Zhang-EtAl-On the Selection of ODE Models with Application to Predator-Prey Dynamical Models
    We propose a computationally inexpensive approach that employs statistical estimation of the full model, followed by a combination of a least squares approximation (LSA) and the adaptive Lasso.
    164

    views

    69

    downloads

    0

    comments

    0

    adaptations

    1975-Rodda-Sampson-Smith-The One-Compartment Open Model Parameter Estimation
    A new estimation procedure is proposed for estimating the parameters of the simplest pharmacokinetic model, the one-compartment open model.
    147

    views

    55

    downloads

    0

    comments

    0

    adaptations

    Fitting Exponential and Logistic Growth Models to Bacterial Cell Count Data
    In this activity, students will model a noisy set of bacterial cell count data using both exponential and logistic growth models. For each model the students will plot the data (or a linear...
    2061

    views

    2620

    downloads

    1

    comments

    0

    adaptations

    Working with plant phenology data and fitting a nonlinear model using least squares in R
    A participatory live-coding lesson on working with NEON phenology data and fitting a sine-wave model to determine when different species get and lose their leaves.
    3071

    views

    2234

    downloads

    0

    comments

    0

    adaptations

    1984-W_Brunner-D__Focht-Deterministic Three-Half-Order Kinetic Model for Microbial Degradation
    The kinetics of mineralization of carbonaceous substrates has been explained by a deterministic model which is applicable to either growth or nongrowth conditions in soil.
    157

    views

    47

    downloads

    0

    comments

    0

    adaptations

    1999-Khorasheh-Ahmadi-Gerayeli-Application of Direct Search Optimization for Pharmacokinetic Parameter Estimation
    For simple pharmacokinetic compartmental models, analytical solution to the governing differential equations provide a mean to evaluate the associated rate constants. Such methods, however, can not...
    221

    views

    51

    downloads

    0

    comments

    0

    adaptations

    2017-Justin_Krueger-Parameter Estimation Methods for Ordinary Differential Equation Models with Applications to Microbiology
    We demonstrate the feasibility of principal differential analysis using simulation studies and then apply the method to intestinal and vaginal microbiota data.
    243

    views

    84

    downloads

    0

    comments

    0

    adaptations

    2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
    In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters...
    118

    views

    53

    downloads

    0

    comments

    0

    adaptations

    1-066-USCensusModeling-ModelingScenario
    The United States Census, conducted every 10 years, gives data on the United States population, that can be modeled with the exponential, logistic, or Gompertz functions.
    253

    views

    217

    downloads

    0

    comments

    0

    adaptations

    2013-Fathalla_Rihan-Delay Differential Equations in Biosciences - Parameter estimation and sensitivity analysis
    This is a review article to show that delay differential models have a richer mathematical framework (compared with models without memory or after-effects) and a better consistency with biological...
    768

    views

    72

    downloads

    0

    comments

    0

    adaptations

    Linked Genes and Recombination: Advanced Punnett Squares
    An online module in which students learn about more difficult genetics problems, including linked genes and crossing over. Quantitatively students learn about marginal probabilities and chi-square...
    1351

    views

    193

    downloads

    0

    comments

    0

    adaptations

    Math Bench Probability and Statistics: Mice with Fangs - Intro to Punnett Squares
    This is an online activity that provides an introduction to Punnett squares as a tool for visualizing genetic inheritance. The ratios of possible genotypes and phenotypes in offspring are...
    1404

    views

    245

    downloads

    0

    comments

    0

    adaptations

    More Mice with Fangs: Intermediate Punnett Squares
    An online module utilizing probability and Punnett squares to introduce students to more complex genetic problems. The module emphasizes students' use of probability to solve the problems.
    1180

    views

    172

    downloads

    0

    comments

    0

    adaptations

    2017-Helen-Byrne-Further Mathematics Biology
    These studies will be in the context of ecological, biological and biochemical applications.
    173

    views

    44

    downloads

    0

    comments

    0

    adaptations

    Computational Biology using R
    This is an introductory level course on computational biology.
    1676

    views

    515

    downloads

    0

    comments

    0

    adaptations

    SIMIODE Spring 2024 Webinars - WikiModel
    WikiModel is cloud-based application and requires no installation and is run via a web-browser to facilitate rapid implementation. Equations are typed in as they appear in a textbook. ODEs are...
    187

    views

    84

    downloads

    0

    comments

    0

    adaptations

    3-090-OneSpringMass-ModelingScenario
    We lead students through building a mathematical model for a single mass (bob)-spring system that is hanging vertically. We also lead the students, using data that they collect together with their...
    268

    views

    418

    downloads

    0

    comments

    0

    adaptations

    6-026-IsleRoyaleModeling-ModelingScenario
    The primary aim of this project is to draw a connection between differential equations and vector calculus, using population ecology modeling as a vehicle.
    241

    views

    440

    downloads

    0

    comments

    0

    adaptations