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    RNA-seq Analysis
    In this computer lab module, students learn how to process an RNA-seq data set to identify differentially expressed genes (DEGs). The samples for this data set were collected from yeast cells...

    Keywords: LabRNAsequencingUndergraduateNIBLSEincubatorsRNAseqInstructional SettingAudience LevelActivity LengthMore than 1 hourC4. Bioinformatics toolsC5. Data retrievalReviewed at NIBLSEdifferentially expressed genes

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    2011-Brian_Winkel-Parameter Estimates in Differential Equation Models for Population Growth
    We estimate the parameters present in several differential equation models of population growth, specifically logistic growth models and multiple species competition models.

    Keywords: logisticpopulationparameciaGausegradient search

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    MathBench Population Dynamics Module Activity
    The resource accompanies the Mystery of the Missing Housefly Population Dynamics MathBench module which explores exponential and logistic growth models. Students explore the assumptions of the...
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    Teaching Genetic Linkage and Recombination through Mapping with Molecular Markers
    Most introductory genetics courses cover genetic linkage, a core concept in the CourseSource genetics learning outcome framework. Although it is a classical genetics topic, genetic linkage remains...

    Keywords: meiosisphenotypegel electrophoresismicrosatellitesBanding PatternGenetic linkageInheritanceMolecular MarkersPhysical Linkage

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    2017-Sim-EtAl-Optimal control of a coupled tanks system with model-reality differences
    In this paper, an efficient computational approach is proposed to optimize and control a coupled tanks system.

    Keywords: optimal controlflowtankscoupled tanks

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    2010-Del-Ciello-EtAl-Modeling Disease
    We model the transmission of a disease through a population. Such modeling is very important to the study of epidemiology and the practice of medicine.

    Keywords: diseasespreadcarriessymptomaticasymptomatic

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    Data from: Advancing population ecology with integral projection models: a practical guide
    Review important resources for building IPMs and provide a comprehensive guide, with extensive R code, for their construction.

    Keywords: IPMintegral projection modelsdemographyelasticitylife historymatrix projection modelpopulation growth ratepopulation projection modelsensitivitystage structurevital ratesResources @ DryadResources @ QUBES - Data

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    Advancing population ecology with integral projection models: a practical guide
    Integral projection models (IPMs) use information on how an individual's state influences its vital rates – survival, growth and reproduction – to make population projections using regression...

    Keywords: IPMintegral projection modelspopulation growthreviewsdemographyelasticitylife historymatrix projection modelpopulation growth ratesensitivitystage structurevital ratesregressionResources @ QUBES - Teaching & Referencecovariatesanalytics

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    1-039-StochasticPopModels-ModelingScenario
    We develop strategies for creating a population model using some simple probabilistic assumptions. These assumptions lead to a system of differential equations for the probability that a system is...

    Keywords: Probabilitypopulation dynamicsVarianceMeanstochasticdeterministic

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    1-066-USCensusModeling-ModelingScenario
    The United States Census, conducted every 10 years, gives data on the United States population, that can be modeled with the exponential, logistic, or Gompertz functions.

    Keywords: datalogisticpopulationGompertzcensusgoodness of fit

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    Connecting Viral Pandemics to Ecological Population Growth Models
    In this activity students use the HHMI Population Growth Models interactive to explore R0 for diseases and discuss the importance of connecting population ecology to current events like the...
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    Exploring Population Change without Selection: Avida-Ed Lab Book Exercise 4
    An introductory activity exploring how a population changes without natural selection using the Avida-ED simulation.

    Keywords: population geneticsEvolutionavida-edsoftware simulationsSelection

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    Population Ecology in Swirl: Estimating Population Sizes
    The students will learn to estimate population sizes and consider assumptions of mathematical models and their applicability to the ecology of an organism/population

    Keywords: RSwirl

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    Hardy-Weinberg Equilibrium
    This module introduces the Hardy-Weinberg model in the context of understanding the population's genotype and allele frequencies. It is intended for an introductory biology audience.

    Keywords: genotypeallelesGenetics and EvolutionFrequenciesHardy-Weinberg model

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    Predator-Prey Dynamics: the Lotka-Volterra Model
    This module introduces the Lotka-Volterra model in the context of understanding how predator and prey interact. It is intended for an introductory biology audience.

    Keywords: differential equationsecologypredatory-prey modelLotka-Volterrapredator-prey interactions

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    The Mystery of the Missing Martens
    National Center for Case Study Teaching in Science- this interrupted case study introduces basic modeling to investigate a decline in an American marten population on an island in Southeast Alaska.

    Keywords: modelingsurvivaldata analysisvital ratessurvivorshippopulation ecologyage structurefecundityWildlife Biologymodellingmartensbirth ratelife table

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    Discovering Prokaryotic Gene Regulation with Simulations of the trp Operon
    The trp operon exemplifies important biological concepts, including the central dogma of molecular biology, feedback inhibition, and gene regulation. For this reason, regulation of the trp operon...

    Keywords: prokaryotesgene regulationattenuationfeedback inhibitionrepressible operontrp operon

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    2017-Rosario-Antony-Mathematical Model for Future Population Scenario In India And China – An Econometric Approach
    A mathematical model including dynamical systems, statistical models and differential equations involves variety abstract structures. Population growth is one of the main issues in India and China...

    Keywords: logisticIndiavital coefficientsAsiaCarrying Vapacitiyannual growth rate

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    2009-James_May-Nonlinear vibration control of long flexible structures
    An automated, non-linear control scheme was developed to transfer energy from the fundamental vibration mode, where most vibration energy of the structures of interest resides, to higher order...

    Keywords: vibrationdampingtuned mass damperviscousnodalmodel dampingflexible structureenergy transfer

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    2003-Rasmussen-Keynes-Lines of Eigenvectors and Solutions to Systems of Linear Differential Equations
    The purpose of this paper is to describe an instructional sequence where students invent a method for locating lines of eigenvectors and corresponding solutions to systems of two first order linear...

    Keywords: instructional designeigenvalueseigenvalue analysis

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