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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Science “Fails”: A Bank of Historical Examples for Learning From Failure in Science
    Learning from failure is critically important to the processes of scientific inquiry, discovery, and invention. However, students are not routinely taught how to reflect on, learn from, and...

    Keywords: metacognitionScience process skillsLearning from failurepower and privilegestudent wellbeing

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    Ontology for UDL and Related Content
    This is a description of tagging ontology that can be used for UDL resources
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    REMNet Tutorial, R Part 2: Importing Your Microbiome Data into R 5.3.19
    Video on importing data into R from the Research Experiences in Microbiomes Network

    Keywords: growth mindsetVideoMicrobiology EducationR programming languagemicrobiomesmath attitudesResources @ BIOMAAPmistakesvalue of mistakesresearch in the classroomREMNeturban microbiomes

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    Quantitative Reasoning: Peer Review 16(3), 2014
    In this issue of the journal Peer Review, the authors discuss the issues surrounding quantitative literacy.

    Keywords: mathematicseducationquantitativemathQuantitative reasoningquantResources @ AACUproceedingsResources @ QUBES - Teaching & Reference

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    Pokemon Go and Ecology
    These are resources associated with using Pokemon Go to teach concepts in Ecology.

    Keywords: Pokemon Go

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    A Remote-Learning Framework for Student Research Projects: Using Datasets to Teach Experimental Design, Data Analysis and Science Communication
    Remote learning often requires an alternative to hands-on, student-designed research projects. To this end, we created a package of scaffolded assignments to support introductory students through...

    Keywords: population growthphysiologyecotoxicologyphotosynthesis

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    Casting a Wide Net via Case Studies: Educating across the undergraduate to medical school continuum in the biological sciences
    This article seeks to help bridge undergraduate and medical educators by describing shared educational goals and strategies, highlighting resources relevant for both groups, and exemplifying shared...

    Keywords: genetic testingdirect-to-consumer genetic testinginformed consentprenatal screeningsecondary findingswhole genome sequencing

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    2015-Boggess-EtAl-Mathematical Modeling in Ecology - Simulating the Reintroduction of the Extinct Passenger Pigeon
    To determine under which conditions a Passenger Pigeon could survive a reintroduction into a natural habitat, we used two types of models.

    Keywords: simulationagent-based modelingallee_effectPassenger Pigeonsforest envirnomentHolling Type III functional responseBio-energeticstree distributions

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    Genome Sequence Data in R using Biostrings (Swirl Lesson)
    By the end of this lesson, students should be able to load FASTA files into R as DNAStringSets and use width() and alphabetFrequency(), combined with other functions like sum() and mean(), to...

    Keywords: R programming languagecourse-based undergraduate research experienceBioinformatics and GenomicsCURECUREscourse-based research experiences (CUREs)STEM CUREsComparative genomicsBioconductor

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    Dendroclimatology
    Dendroclimatologists can reconstruct climate records further into the past than written records, by examining tree rings. Students "reverse-engineer" this process by considering growth rates of a...

    Keywords: linear regressiongraphingdata visualizationstandardizationclimatetree ringsdendrochronology

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    Squirreling from Afar: Adapting Squirrel-Net Modules for Remote Teaching and Learning
    The shift from face-to-face instruction to remote teaching and learning has proven to be a challenging endeavor for many reasons, including lack of time, resources, and inspiration. Lab courses,...

    Keywords: online learningbehavioral ecologyCUREsRemote teachingfield ecologySquirrelSquirrel-Net

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    Using Structured Decision Making to Explore Complex Environmental Issues
    Environmental issues are inherently complex, often requiring multiple interested parties to come together before agreeing on a solution. Structured decision making is a tool used by federal and...

    Keywords: interdisciplinarysocio-ecological systemsscience policystakeholderstructured decision making

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    Central Dogma, Dictionaries, and Functions: Using Programming Concepts to Simulate Biological Processes
    Technologies like next-generation sequencing, proteomics, and high-throughput phenotyping have transformed the way we do biology. There is a continued need for scientists with computational skills...

    Keywords: computationpythonJupyter notebookFunctionscentral dogmaDictionaries

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    Design Your Own Flow Cytometry Experiment: A Four-Week Inquiry Laboratory
    Due to its importance to the field, flow cytometry should be one of the hallmark methods a student learns in the lab portion of an undergraduate immunology course. Flow cytometry is a classic lab...

    Keywords: Immunologyexperimental designFlow cytometryMice

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    Introduction to NEON
    This is a presentation that provides an introduction to the National Ecological Observatory Network and the educational resources it provides for working with large ecological data.
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    Revising Social & Environmental Justice Open Educational Resources through UDL and Accessibility Lenses
    The Revising Social & Environmental Justice Open Educational Resources through UDL and Accessibility Lenses Working Group met during the Fall 2021 semester as part of the BIOME Institute. This...

    Keywords: social justiceenvironmental justiceBiome Institute2021 BIOME

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    Sharing Stories: Developing OER around Podcasts
    Our team met in the fall of 2021 to discuss and develop resources around podcasts. We created lists of podcast episodes for several courses, learned about listening guides, shared assignment...

    Keywords: podcastslistening guides

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    Built-in Flexibility: Lessons learned to engage your community virtually
    Materials and resources for "Built-in Flexibility," an episode of the webinar series, "Adapting to COVID-19: Resources for Natural History Collections in a New Virtual World."

    Keywords: professional developmentidigbionatural history collectionswebinarcommunity engagementonline eventsonline professional developmentaccess

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    Findings from S-JEDI Learning Community Post-Survey
    Summary of findings of the Summer 2020 S-JEDI Learning Community Post-Survey

    Keywords: evaluationscore

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    Genomics Education Alliance: Towards Genomics CURE templates
    Here we present major findings of a national survey of faculty teaching genomics CUREs conducted by the GEA, and our work on presenting relevant resources on the QUBES web portal.

    Keywords: genomicsRNAseqCURECUREscourse-based research experiences (CUREs)

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