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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Cell Collective: Learning biology with modeling and simulations
    Cell Collective is an online, research-grade modeling platform adapted to engage students in creating and simulating dynamic models of biological processes.

    Keywords: modelingsimulationSimulationsCell Collective

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    Exploring multiple approaches to engage underrepresented students in research with natural history collections.
    The iDigBio team has leveraged natural history collections in a 3-pronged approach designed to engage undergraduates from underrepresented groups in collections-based research.

    Keywords: idigbionatural historynatural history museumsnatural history collectionsunderrepresented students

    2026

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    649

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    10

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    Ciliate Genomics Consortium: a professional learning community sharing modular curricula to support undergraduate research in the classroom
    The Ciliate Genomics Consortium (CGC) employs an integrative teaching and research model that combines both inquiry-driven class laboratory activities and collaborative consortium pedagogies to...
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    Microbiomes forAll: The Research Experiences in Microbiomes Network
    Poster on REMNet presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: undergraduate researchcourse-based undergraduate research experiencemicrobiomesmicrobiomeCUREREMNet

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    Growing from Tiny Earth: A model for interdisciplinary CUREs at Johnson County Community College
    This resource includes a video that highlights how Tiny Earth is implemented and a poster that shows independent research done by students after participating in the CURE courses.

    Keywords: researchCURECUREs

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    Fibroblast spheroids and other models of wound healing and infectivity
    The goal of our research is to create a functional in vitro 3D model of skin for the purpose of experimentation.

    Keywords: researchwound healing

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    CRISPR Gene Editing: Designing the gRNA and Donor Template
    In this adaptation, students learn how CRISPR/Cas9 is used in bacterial immunity and gene editing. Students create both a gRNA target and a donor template to edit a gene. Mutations can be from the...

    Keywords: geneticseducationcell biologymolecular biologymutationStem cellsstructure-functionmolecular visualization and analysis3D protein structure /function analysisCRISPR/Cas9crisprDNA mutationPiwiPDBMolecular Case StudyPiwi Matters

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    An introduction to population matrix models: a swirl lesson
    Students will learn how to set up a population matrix model in R and use it for demographic analysis of a population, including projecting population growth, determining lambda and the stable age...

    Keywords: population dynamicsRpopulation growthonlinedemographypopulation projection modelquantitative biologypopulation modelmatrix modelspopulation ecologyage structurepopulation biologypopulation modelingSwirlDemographic processespopulationLeslie matrix

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    Why does Blood Flow Change? Investigating the Math of Blood Flow Dynamics
    This collection of activities explores the relationship between blood flow, pressure, and the factors of resistance through graphs and modeling direct and inverse variation.

    Keywords: quant biographingRatiosmathassessmentcollege algebraundergraduate educationphysiologyAnatomyhuman biologyvariationCardiovascular physiologyAnatomy & Physiologylab activityOpenStaxqbccmanipulate equationsUnderstanding fractionsChoosing modelsUnderstanding ratesEstimating answersUse elementary functionsCreate graphsInterpret graphsRates and ProportionsSolving Equations and Inequalities

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    Materials for Teaching the SIR Epidemic Model
    This web page contains materials created by faculty of the University of Nebraska-Lincoln Department of Mathematics to teach basic fundamentals of mathematical epidemiology.
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    Caribbean coral reef structure and biodiversity - Comparing boosted regression tree & multiple regression approaches
    Creating and comparing boosted regression tree models to multiple regression models.
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    NELF Explorer: Drivers of Landscape Change
    Students explore the connections between land use decisions and land cover change, as well as how to predict the possible impacts of land use decisions into the future.

    Keywords: landscape ecologyscenario analysisland systems scienceLULCC

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    Global Temperature Change in the 21st Century: An Introduction to Global Climate Models and Graphing in Excel (Adapted for Non-Majors)
    Students link human behavior in various climate change scenarios to predicted temperature outcomes at both local (their assigned Latitude) and global (Latitudinal trends) scales. This adaptation is...

    Keywords: ExcelResources @ ESA - TIEEecology labclimate changeenvironmental scienceglobal changehuman-environmental interactionsSimple Linear Regressionhuman impactsinclusive pedagogy-FMN

    1221

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    SIR BuildIt
    An introduction to epidemiological models using interactive Excel worksheets

    Keywords: epidemiologymodelingTeaching Material @ BioQUEST_ESTEEMExcelinfectious diseaseInfectious Disease ModelingSIR modelsSIR

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    Island Biogeography
    The students will practice the basic code to test MacArthur and Wilson’s (1967) Island Biogeography model, focusing on how island size, distance, and perturbation affect species numbers.
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    Data Analysis and Cancer
    This is a flipped classroom approach, students will learn the basic content about cell-signaling, p53, and transcription factors before class. During class students will focus on data analysis...

    Keywords: Resources @ HHMI - BioInteractiveBiochemistrymolecular biologydata interpretationBiological Data Analysiscell cyclemacromoleculesGenetic diseaseCell signaling

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    Bacteria Transformation
    TeachEngineering resource in which students construct paper recombinant plasmids to simulate the methods genetic engineers use to create modified bacteria.

    Keywords: bacteriaengineeringGMOsbacterial transformationplasmids

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    Climate Change Module (Project EDDIE)
    Students explore how climate is changing from the recent record. Produced by Project EDDIE.
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    Lake Mixing Module (Project EDDIE)
    Students explore spatial and temporal patterns of lake mixing using high-frequency temperature data from lakes around the world.

    Keywords: stratificationProject EDDIE

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    Cross-Scale Interactions (Project EDDIE)
    Students explore new modeling and computing tools while learning fundamental concepts about how lake phytoplankton blooms occur through cross-scale interactions.

    Keywords: modelingProject EDDIE

    1127

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