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    Exploring HIV Evolution
    In this activity you will study aspects of sequence evolution by working with a set of HIV sequence data from 15 different subjects (Markham, et al., 1998). You will first learn about the dataset,...

    Keywords: EvolutionbioinformaticssequencingUndergraduateNIBLSEincubatorsHIVAudience LevelC1. Role of bioinformaticsC4. Bioinformatics toolsRecommended by NIBLSE

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    Riverbird distributions and habitat use
    Riverbirds are widespread, use diverse riparian habitats, and respond rapidly to changing conditions. Students can apply riverbird data to evaluate hypotheses about these responses, while gaining...

    Keywords: logistic regressionHabitat selectionRiver Field Studies NetworkWaterfowl raptorkingfisherheronfocal speciesmonitorriverbank

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    Count me in: Increasing early detection of invasive species with community science
    In this lesson, students interpret a map of species occurrences. Then, students view and reflect on an interview with biologist Dr. Jennifer Dean, whose research includes the map that they...

    Keywords: graph interpretationInvasive SpeciesAquatic invasive speciesspatial datawomen in steminvasive plantsCitizen and Community ScienceBioGraphIrepresentation in STEMmap interpretationiMapInvasives

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    Regression: Tree Rings and Measuring Things
    Students develop scatter plots of growth rings by tree diameters and determine the equation of their best fit line.

    Keywords: NIMBiosregressiontree ringsline of best fit

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    Investigating the effects of urbanization on bird biodiversity: Testing three biodiversity hypotheses using citizen science data
    Students generate predictions and test three hypotheses about how biodiversity is affected by urbanization over time using citizen science generated bird count data and land use data from 13...

    Keywords: hypothesis testingBiodiversityurbanizationguided inquiryland useproductivity hypothesisecosystem stress hypothesisintermediate disturbance hypothesis

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    More In Depth Spreadsheet Management Adaptation of Data Management using NEON Small Mammal Data
    This adaptation consists of three exercises that introduce students to 1) format spreadsheet data tables, 2) carry out spreadsheet quality control, and 3) count/sort/filter data of interest in...

    Keywords: data managementspreadsheetsmammalsCapture mark-recapture

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    THE IMPORTANCE OF GREEN SPACES & NATIVE PLANTS TO URBAN AVIFAUNA: A Lesson on how urban residential yards can support birds during their annual cycle
    In this lesson students will learn about the impacts of urbanization, and the conservation challenges it poses to wildlife, in particular avifauna. Introductory ecology topics such as the theory of...

    Keywords: birdsurbanizationPoisson Distributionnative plantsGeneralized linear models

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    1-001-MM-DeathAndImmigration-ModelingScenario
    We conduct a simulation of death and immigration, using a small set of "individuals", m&m candies or any two sided object (coin, chips), in which upon tossing a set of individuals we cause some to...

    Keywords: simulationimmigrationdeathSpanishdatsWinkelBrian Winkel

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    Engaging non-science students in Citizen Science projects
    I created this project for students in my non-majors biology class in 2016 with the following objectives: 1) to show them some of the sorts of projects scientists conduct 2) to introduce them to...
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    Enabling authentic ecological inquiries using research data and imageries in large classrooms
    Presentation made by Ben Wu et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America annual...

    Keywords: Ecological Society of America

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    Fitting Exponential and Logistic Growth Models to Bacterial Cell Count Data
    In this activity, students will model a noisy set of bacterial cell count data using both exponential and logistic growth models. For each model the students will plot the data (or a linear...

    Keywords: modelingdata analysislinear regressiongraphingExponentsoptimizationcalculusInterpreting GraphsFunctionsqbccCellular and Molecular BiologyChoosing modelsUnderstanding ratesConcepts in Statisticsmeasurementsmanipulating equationscreating graphsExponential and Logarithmic Functionsinterpreting tables

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    Gotcha! Which fly trap is the best? An introduction to experimental data collection and analysis
    Collecting data from experimental observations is an important component of the scientific process; likewise, the analysis of the data is essential to understanding the observed trends and patterns...

    Keywords: data analysisexperimental designdata collectionfruit fliesfly traps

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    1-046-GoingViral-ModelingScenario
    Students participate in a simulation of the spread of a viral disease in the classroom and model the process with a logistic differential equation. The simulation uses random numbers and the entire...

    Keywords: simulationmathematical modeldatalogisticrandom number generatorfittingrandom process

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    Bioimage Informatics Activity
    Students use basic bioimage informatics techniques to acquire quantitative data from images of cultured cells and test a hypothesis about the effect of a genetic mutation on cellular phenotypes

    Keywords: geneticsResources @ HHMI - BioInteractivegenomicscancergenetic basis of diseasebiology of cells

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    Teaching Exponential and Logistic Growth in a Variety of Classroom and Laboratory Settings
    Experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 9

    Keywords: Resources @ ESA - TIEEpopulation growth

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    Online Adaptation to "Gotcha! Which fly trap is the best? An introduction to experimental data collection and analysis"
    We present here a simple and engaging experiment capitalizing on the universal need to rid our homes of fruit flies to teach experimental design and analysis. In an earlier paper, we described an...

    Keywords: data analysisexperimental designolfaction

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    Data Management Adaptation: Correlating Forest Community Dynamics to Climate
    Students use vegetation structure data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by correlating...

    Keywords: forest ecologydata managementspreadsheetsCommunity DynamicsNEONDIGNational Ecological Observatory Networkbiomass

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    Using a Primary Cell Culture Model to Study the Neural Extracellular Matrix
    The extracellular matrix (ECM) provides structural support to cells, but also has key roles in mediating cell adhesion, cell signaling, and differentiation. While this topic is discussed in the...

    Keywords: Neural extracellular matrixPerineuronal netPrimary neuronal culture

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    Enhancing the Microscopy Skills of Non-Science Majors and Nursing Microbiology Students: Promoting the Practice of Observing Multiple Fields of View Using Blood Smear Slides
    One of the challenges in teaching microscopy is having students scan multiple fields of view at high power magnification. Many times, students will feel this unnecessary, especially when presented...

    Keywords: Microscopy SkillsBlood SmearsBlood Disorders

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    Inexpensive Cell Migration Inquiry Lab using Zebrafish
    Cell migration is an important and interesting topic that has the potential to engage students in cell biology by its intrinsically active nature. However, most ways to investigate cell migration...

    Keywords: CytoskeletonCell migrationmodel organisms

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