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    List of models in which observed patterns are Important
    Supplemental material for ABM
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    Breeding synchrony in colonial birds: from local stress to global harmony
    This is a supplemental resource for ABM
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    NetLogo refresher course
    This is a supplemental resource from ABM
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    Marriage age model ODD
    Supplemental resource from ABM
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    Data from: Agent-based and Individual-based Modeling: A Practical Introduction, Chapter 5, Exercise 10 [Elevation]
    Supplemental data for ABM
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    Data from: Agent-based and Individual-based Modeling: A Practical Introduction, Chapter 5, Section 5.5 [Elevation]
    Elevation data input file for Section 5.5 (tab-separated plain text).
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    Wolf Sheep Predation Simulation Exercise
    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.
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    2012-Rusinko-Swan-Agent-Based Fabric Modeling Using Differential Equations
    We use an agent-based modeling software, NetLogo, to simulate fabric drape by applying a modified mass spring system.
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    2015-Just-Callender-Differential equation models of disease transmission
    The work give full analyses of standard epidemic model and then shows how to do it with differential equations and agent-based modeling. Then it compares the results.
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    An Introduction to agent-based modeling.
    Introductory level textbook based on a collection of lecture notes from an undergraduate course on agent-based modeling at Arizona State University.
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    ODD Description of the BEFORE Beech Forest Model
    This is a supplemental resource from ABM
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    2006-Wilensky-Reisman-Thinking Like a Wolf a Sheep or a Firefly
    We describe a computation-based approach that enables students to investigate the connections between different biological levels using agent-based, embodied modeling tools.
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    COVID-19 Spread NetLogo ABM
    This project aimed to utilize agent-based modeling in NetLogo to create a simulation of COVID-19 spread in a traditional college classroom. The model allows for an evaluation of different...
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    ModelSim Population Biology Unit
    This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology.
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    Marriage Model (with errors)
    Marriage age model for use with NetLogo and ABM material
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    The ODD protocol: A review and first update
    The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs).
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    2015-Heiko_Enderling-Integrating experimental data to calibrate quantitative cancer models
    For quantitative cancer models to be meaningful and interpretable the number of unknown parameters must be kept minimal. We focus on a tumor hierarchy of cancer stem and progenitor non-stem cancer...
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    2018-Winkle-Igoshin-Bennett-Josic-Ott-Modeling_Mechanical_Interactions_in_Growing_Populations_of_Rod-Shaped_Bacteria
    Here, we present an agent-based model that allows growing cells to detect and respond to mechanical interactions.
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    2014-Chivers-EtAl-Predator-prey systems depend on a prey refuge
    We present an agent-based model which does not require the factors or constraints of previous models to reproduce all six patterns in persistent populations.
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    Discrete Math Modeling with Biological Applications (Course Materials)
    These are the materials for Math 214 offered at Rhodes College.
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