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    Maria vs Malaria - AR Adaptation
    This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria. Students will be able to view selected molecular views from the...

    Keywords: bioinformaticsAugmented RealityLarge class sizemolecular visualizationstructure-functionuniprotProtein Data BankMolecular Case StudyMolecular CaseNet

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    The Molecular CaseNet Pipeline for Authoring, Piloting, and Evaluating Molecular Case Studies
    This poster provides an overview of the pipeline for authoring, piloting, and reviewing molecular case studies for publication in Molecular CaseNet.

    Keywords: resources @ Molecular CaseNet

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    2011-Mandal-EtAl-Mathematical models of malaria
    The first aim of this article is to develop, starting from the basic models, a hierarchical structure of a range of deterministic models of different levels of complexity. The second is to...

    Keywords: epidemiologytransmissionhost-parasitemalariaRoss model

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    2009-James_May-Nonlinear vibration control of long flexible structures
    An automated, non-linear control scheme was developed to transfer energy from the fundamental vibration mode, where most vibration energy of the structures of interest resides, to higher order...

    Keywords: vibrationdampingtuned mass damperviscousnodalmodel dampingflexible structureenergy transfer

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    2001-Noymer-The transmission and Persistence of Urban Legends-Sociological Application of Age-Structures Epidemic Models
    This paper describes two related epidemic models of rumor transmission in an age-structured population. Rumors share with communicable disease certain basic aspects, which means that formal models...

    Keywords: age structurerumorspersistenceUrban Legends

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    Isolation and Functional Analysis of a Pancreatic Enzyme in an Introductory Student Lab
    Structure and function are correlated at all levels of biology. This topic is typically addressed early in an undergraduate class in general or molecular biology before students have gained much...

    Keywords: Protein StructureproteaseEnzymechemical bondscatalysissolubility

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    An undergraduate bioinformatics curriculum that teaches eukaryotic gene structure
    Gene structure, transcription, translation, and alternative splicing are challenging concepts for many undergraduates studying biology. These topics are typically covered in a traditional lecture...

    Keywords: bioinformaticsGenome BrowsergenomicsRNAseqsplicingComputer ModelGene Structure

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    COVID-19: Molecular Basis Infection Revisited One Year into the Pandemic
    This adaptation was written in Spring 2021 exactly one year after the original case and includes explorations of the emerging mutations within the spike protein

    Keywords: infectionvaccinemolecular visualization and analysisCOVID19PDBSARS-CoVMolecular Case Studyvariantsantibody

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    (Online) Figure of the Week: Skills for Interpreting Comparative Genomics Figures
    Students use their number sense to make observations and explain or guess at patterns shown, discussing in a weekly online Q&A forum.

    Keywords: graphsonline learningmath anxietyonline forummath attitudesResources @ BIOMAAPInterpreting Graphsdiscussion forumComparative genomics

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    Climate Change Module- Beck Modifications (Project EDDIE)
    Students explore how climate is changing from the recent record
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    Brian Dewsbury's Resources on Inclusion
    A list of material in various platforms that help to inform developing thoughts on the ways in which social structure affects the nature of teaching and learning.
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    Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE
    We introduce TRACE, a framework for documenting model testing and analysis. TRACE is based on the recently proposed framework of model "evaluation" , and is designed to make models fit for...

    Keywords: standardizationgood modelling practicerisk assessmentdecision supportTRACEResources @ QUBES - Teaching & Reference

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    Augmented Reality Metabolic Pathways (ARMET)
    The ARMET app is developed using Unity, 3D molecules obtained from Protein Data Bank and ChemSpider-chemical structure database, the usage data are stored into a database (MySQL) and are analyzed...

    Keywords: BiochemistryAugmented RealityMetabolic Pathways

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    Understanding Protein Domains: A Modular Approach
    An understanding of protein structure, function, and interaction is central to biochemistry. One angle into this topic is to engage students in considering protein domains as modules that develop...

    Keywords: Protein Structure

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    A 360˚ View of COVID-19
    In March 2020, institutions underwent a massive transition to distance learning as a result of the COVID-19 pandemic. With so little time to devise new materials to maximize learning in the new...

    Keywords: geneticsImmunologyBiochemistrybioinformaticsmolecular evolutionpublic healthvirusCOVID19

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    BioGraphI FMN Leader Guide (Template version) - Google Docs
    This document contains the leader guide for the Biologist and Graph Interpretation (BioGraphI) Project’s semester-long Faculty Mentoring Network (FMN). FMN leaders use it to organize the FMN, and...

    Keywords: professional developmentCurriculum developmenttemplateInclusive teachingleadershipDiscussionBioGraphIBioGraphI FMNfacilitation

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    Figure of the Week: Applied Statistics for Wildlife Research
    Students use their number sense to make observations and explain or guess at patterns shown, discussing at the start of a weekly computer lab. This slide deck focuses on figures related to concepts...

    Keywords: statisticsgraphsmath anxietyWildlife Biologymath attitudesInterpreting Graphssense of belongingfear of negative evaluation

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    Forests for the Future: How Can Trees Offset Carbon Emissions?
    This activity explores the chemistry and biology underlying forest carbon sequestration, a process that removes carbon from the atmosphere via photosynthesis and storage in plant tissues and soils....

    Keywords: carbon foot printCarbon sequestration of forests vegetationforest ecology (structure and function)

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    Environmental Pollution & Public Health (Project EDDIE)
    Environmental health is a field of study within public health that is concerned with human-environment interactions, and specifically, how the environment influences public well-being. In this...

    Keywords: public healthProject EDDIEpollution

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    1-003-IntroNumericalMethods-TechniqueNarrative
    We develop elementary approaches to numerically solving first order differential equations with Euler's Method, Improved Euler's Method and develop these geometrically to compute numeric solutions...

    Keywords: analytic solutionEuler's methodimproved Euler's method

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