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    Box of Lessons: A Toolkit for Introducing Students to Biomolecular Structure and Function
    This is a poster describing a collection of open educational resources that were developed by faculty participating in the Molecular CaseNet Faculty Mentoring Network in Spring 2022. The collection...

    Keywords: bioinformaticsbiomolecular structureProtein Data Bankresources @ Molecular CaseNet

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    2007-Joseph_Myers-Brian_Winkel-Modeling_a_Mystery_Circuit_in_Mathematics_Class_Using_Differential_Equations_Laplace_Transforms_and_Transfer_Functions
    We discuss the introduction, student discovery, and teaching of a system of differential equations which model a circuit.

    Keywords: circuitLaplace transformtransfer functionmystery circuitvoltage frequencytwo loop circuit

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    Waking up Anna - Adaptations and Conversion to Mol*
    This case focuses on understanding the molecular basis of Anna's sleeping disorder and its treatment. The adaptations addressed question clarity and reformatting to use Mol*.

    Keywords: sleepmolecular visualization and analysisPDBMolecular Case StudyGABAMolCaseNetMol*MolStarProtein visualizationFlumazenil

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    Waking up Anna
    This case focuses on understanding the molecular basis of Anna's sleeping disorder and its treatment.

    Keywords: sleepmolecular visualization and analysisPDBMolecular Case StudyGABA

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    Movement: Nature's Flying Machines (Online)
    Adapted for online learning: In this lab, you will explore the physics of flight, the adaptations that make powered flight possible, and the evolution of powered flight in vertebrates and...

    Keywords: citizen sciencequantitative skillsDigital RepositoryFlight

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    REMNet Tutorial, Excel Part 3: Organizing Your Microbiome Data 5.3.19
    Video on organizing microbiome using Excel from the Research Experiences in Microbiomes Network

    Keywords: ExcelVideoMicrobiology Educationmicrobiomesresearch in the classroomREMNeturban microbiomes

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    The Evolution of Color Vision in Monkeys: From Nucleotides to Ecology
    This case study examines the evolution color vision in Old World and New World monkeys from multiple biological perspectives.

    Keywords: phylogeneticsgenescase studybiologyResources @ NSF - NCCSTSColor visiondichromatictrichromaticnucleotidesproteinsopsinscell functioncone cellsphotoreceptorsspectral shiftgene duplicationmeiosissex-linkedfood gatheringmonkeysprimatesResources @ QUBES - Teaching & Referenceundergraduate biology education

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    Transpiration
    In this lab, students will examine differences between C3 and C4 plants in their transpiration rates.

    Keywords: plant physiologybotanylaboratoryResource Type

    2014

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    Spreadsheet Tutorial 5: Histogram
    Generate a histogram using a variety of methods.

    Keywords: Resources @ HHMI - BioInteractiveScientific ProcessStatistics and MathScientific MethodologyHigh School

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    Spreadsheet Tutorial 4: t-Test
    Calculate t-values and perform t-tests using built-in functions.

    Keywords: Resources @ HHMI - BioInteractiveScientific ProcessStatistics and MathScientific Methodology

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    Using a Sequential Interpretation of Data in Envelopes (SIDE) approach to identify a mystery TRP channel
    This lesson sought to engage students in data interpretation and to encourage critical thinking about neurophysiology in the context of temperature sensation. A family of receptors called Transient...

    Keywords: Cell communicationChannel specificity and activationLimitations of tools of Cell BiologyNeuronal Signaling

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    A Short Laboratory Module to Help Infuse Metacognition during an Introductory Course-based Research Experience
    A core competency identified in Vision and Change for undergraduate biology students is the Ability to Apply the Process of Science. Here, we describe a three-week laboratory module for students in...

    Keywords: metacognitiongene expressionScientific ProcessExperimenal DesignHypothesis Generationmodel organisms

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    Sorry to Eat and Run: A Lesson Plan for Testing Trade-off in Squirrel Behavior Using Giving Up Densities (GUDs)
    All animals need to find and compete for food, shelter, and mates in order to survive and reproduce. They also need to avoid being eaten by predators. Optimal foraging theory provides a framework...

    Keywords: ecologyanimal behaviorAnimal form and functionAnimal nutritionSquirrel-Net

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    Maria vs Malaria
    This case study focuses on a specific enzyme Lactate Dehydrogenase (LDH) in the malarial parasite as a target for treating malaria.

    Keywords: bioinformaticsmolecular visualizationstructure-functionuniprotProtein Data BankMolecular Case StudyMolecular CaseNet

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    2011-W_Wood-Squigonometry
    The differential equations used to define a unit circle, namely x’(t) = - y(t), y’(t) = (t), x(0) = 1, y(0) = 0 are generalized to produce interesting functions which...

    Keywords: Trigonometric Functionscirclesquigonometryinverse functiontrigonmetry

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    2015-Carl_Lutzer-Using Expected Value to Introduce the Laplace Transform
    We propose an introduction to the Laplace transform in which Riemann sums are used to approximate the expected net change in a function, assuming that it quantifies a process that can terminate at...

    Keywords: Expected ValueRiemann sumnet change

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    2011-W_Wood-Squigonometry
    The differential equations used to define a unit circle, namely x’(t) = - y(t), y’(t) = x(t), x(0) = 1, y(0) = 0 are generalized to produce interesting functions which...

    Keywords: TrigonometryTrigonometric Functionsparametric equationscirclesinecosinesquigonometryinverse function

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    Teaching Protein Structure Modeling
    New strains of microbes have been regularly discovered and brought into a laboratory for study in many different directions. When a new microbial genome is sequenced and assembled, the homologues...

    Keywords: Microbiology Educationbioinformaticsprotein structure modeling

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    2018-Dyjuan_Tatro-The_Mathematics_of_Cancer-Fitting_Gompertz_Equation_to_Tumor_Growth
    Fitting the Gompertz Model to long term breast cancer study data, this project ascertains gompertzian parameters that can be used to predicts tumor growth as a function of time.

    Keywords: tumorgrowthGompertzfittingparameter

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    Curvature and Maximum Permissible Speeds
    In this activity students will compute the curvature of a section of commuter rail and use it to determine a safe speed at which a train should can round the corner without tipping or derailing....

    Keywords: data analysiscalculusnumerical approximationengineeringcalculus 3transportation

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