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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    3-091-SpringModeling-ModelingScenario
    In this lab students will collect data on their spring mass systems and compare their empirical models to their theoretical ones—giving them an opportunity to actually test a model against data.

    Keywords: datalaboratoryLoggerProVerniermass-spring systemmodel validationempirical modeltheoretical model

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    6-020-AlgaePopulationSelf-Replenishment-ModelingScenario
    This modeling scenario investigates the massive algal blooms that struck Lake Chapala, Mexico, in 1994. A

    Keywords: algaepopulationMexicoqualitativecompartmentlinearizationJacobianlaknondimensionalizationpplane

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    CRISPR Gene Editing: Designing the gRNA and Donor Template
    In this adaptation, students learn how CRISPR/Cas9 is used in bacterial immunity and gene editing. Students create both a gRNA target and a donor template to edit a gene. Mutations can be from the...

    Keywords: geneticseducationcell biologymolecular biologymutationStem cellsstructure-functionmolecular visualization and analysis3D protein structure /function analysisCRISPR/Cas9crisprDNA mutationPiwiPDBMolecular Case StudyPiwi Matters

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    Developing hands-on activities linking plankton and computational thinking
    Poster on computational thinking as a method to help address complex problems, create systems, and understand behaviors presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: computational thinkingplanktonSummer Workshop 2018

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    Teaching Advanced Concepts in Regulation of the Lac Operon With Modeling and Simulation
    Success in biochemistry and other life science courses requires that students understand important biological concepts. One of these concepts is how gene regulation ensures that homeostasis is...

    Keywords: gene regulationinducible operonProkaryotic cellPhosphoenolpyruvate transferase system (PTS)

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    Breaking It Down: What Factors Control Microbial Decomposition Rates?
    Demonstrating and modeling changes in ecosystem processes in the laboratory classroom can be logistically difficult and expensive. This complexity often leaves little time for students to generate...

    Keywords: data analysishypothesis testingdata visualizationdata managementMicrobial RespirationDecompostionAbiotic ConditionsResults Communication

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    Turning ecological research into engaging online modules for undergraduates through Gala/OCELOTS
    Learn how to create and implement online modules in tropical ecology for undergraduates. In an NSF-funded network, researchers and specialists in 4DEE, pedagogy, interactive data tools, and media...

    Keywords: tropical biologyOCELOTSLDC2023

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    Ancient Insects
    Create a gallery of fossil organisms and identify distinctive body parts (wings, suckers, modified appendages) from the collection. Analyze and interpret these features to predict what type of...

    Keywords: Evolutionpaleontologynatural history collections#NGSS

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    2016-Manheim-EtAl-Improving Decision Support for Infectious Disease Prevention and Control
    This report describes decision-support tools, including models and nonmodeling approaches, that are relevant to infectious disease prevention, detection, and response and aligns these tools with...

    Keywords: infectious diseaseecosystemepidemicmodel policy

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    The ml4bio Workshop: Machine Learning Literacy for Biologists
    Presentation on machine learning literacy for biologists at the 2019 Great Lakes Bioinformatics Conference

    Keywords: bioinformaticsmachine learning

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    SIMIODE Spring 2024 Webinars - WikiModel
    WikiModel is cloud-based application and requires no installation and is run via a web-browser to facilitate rapid implementation. Equations are typed in as they appear in a textbook. ODEs are...

    Keywords: modelingSoftwaretoolapplicationWikiModelmodeling cycle

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    Osmosis: Determination of the rate of osmosis and the isotonic concentration
    This module contains exercises designed to help students understand how solute concentrations affect the direction and rate of osmosis. Students are given different scenarios to predict the...

    Keywords: introductory biologyQuantitative reasoninginterdisciplinarycell functionOsmosisNIQBC2. Data and GraphsC4. mathematical modelsC6. Quantitative LanguageC1. NumeracyC5. Logic and Algorithms

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    Creating a Deeper Understanding of Big Geospatial Data, Volunteered Geographic Information (VGI), and Community Science using Project Eddie Modules
    This module uses the Project Eddie Module Assessing the Risk of Invasive Species Using Community Science Data developed by Heard, M. J. (2023) to create a deeper understanding of big geospatial...

    Keywords: GISInvasive SpeciesGeospatial ScienceProject EDDIEgeographyCitizen and Community Sciencegeographic information sciencevolunteering

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    9-014-TurkeyCook-ModelingScenario
    The goal of this project is to investigate several models for the cooking time for a turkey based on weight, test these models with data obtained from heating curves for turkeys of various weights,...

    Keywords: sphereheat equationturkeyPanofskyradial symmetry

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    Cladistic Analysis Lesson Using Bats
    Phylogenetic analysis can be a challenging concept to grasp for undergraduate biology students. This cladistic analysis lesson utilizes the amazingly diverse Order Chiroptera as a model to...

    Keywords: batsphylogeny and classificationVertebrate Morphologycladistic analysisbat evolution

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    1-001c-PopulationDecayThenSome-ModelingScenario
    You will be modeling the following situation: 100 people are in a hotel. Each day, each person has a random chance of 50% of leaving the hotel. No new people enter the hotel.

    Keywords: simulationoccupancypopulationhotel

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    1-084-GoingViral-ModelingScenario
    Students employ randomization in order to create a simulation of the spread of a viral disease in a population (the classroom). Students then use qualitative analysis of the expected behavior of...

    Keywords: simulationlogisticrandomfittingpartial fractions

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    6-025-WhalesAndKrill-ModelingScenario
    Students will use Excel to observe qualitative behavior in a simulation of a predator-prey model, with blue whales and krill as the predator and prey populations, respectively.

    Keywords: krillwhalepredatpr-prey

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    1-053-SlimeSpread-ModelingScenario
    We offer a video showing real time spread of a cylinder of slime and challenge students to build a mathematical model for this phenomenon.

    Keywords: spreadsheetsslime

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    The Mathematics of Voting Systems: Plurality, Runoff and Ranked Choice
    In this five-day interdisciplinary math and social studies unit, students use math to create informed opinions about the three most common voting systems in the United States: plurality, runoff and...

    Keywords: mathematicsInterdisciplinary STEMInterdisciplinary Mathematics Educationinterdisciplinary math educationvoting

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