You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Investigating Sexually Transmitted Disease (STD) Ecologies Using Geographic Information Systems (GIS) (Abstract) | TIEE
    Identifying, mapping and understanding the magnitude and the spatial prevalence of the Sexually Transmitted Diseases (STDs) such as chlamydia and gonorrhea diseases. Analyzing the spatial trends of...

    Keywords: Resources @ ESA - TIEEDisease ecologyfmnDIGhuman ecology and behaviorbacterial infectionsspatial and temporal spread of diseaseGeographic Information System (GIS)

    2394

    views

    711

    downloads

    0

    comments

    0

    adaptations

    Investigating Leaf Litter Decomposition and Invertebrate Communities in Streams
    Students utilize the provided dataset to engage in an open-inquiry project on the impacts of abiotic and biotic factors on stream macroinvertebrate communities and/or leaf litter decomposition.

    Keywords: Resources @ ESA - TIEEInvasive SpeciesfmnDIGspecies tolerance curvesdiversity indiceslitter decomposition ratesfreshwater ecologyopen-inquiry

    2332

    views

    634

    downloads

    0

    comments

    0

    adaptations

    2016-Manheim-EtAl-Improving Decision Support for Infectious Disease Prevention and Control
    This report describes decision-support tools, including models and nonmodeling approaches, that are relevant to infectious disease prevention, detection, and response and aligns these tools with...

    Keywords: infectious diseaseecosystemepidemicmodel policy

    121

    views

    60

    downloads

    0

    comments

    0

    adaptations

    Investigating human impacts on stream ecology: locally and nationally
    This is a modification of an original TIEE Module, investigating these questions: How does nutrient pollution impact stream ecosystems locally and nationally? How does land cover change impact...

    Keywords: tool:rstudiolandscape ecologyStream ecologyBox Plotsland usespatial analysisEutrophication

    1250

    views

    665

    downloads

    0

    comments

    0

    adaptations

    Sequence Similarity Resource Adaptation: Exploring Ebola Virus
    This adaptation of the sequence similarity resource provides biology students with a basic set of bioinformatics concepts and tools. These concepts and tools are used to explore relationships...

    Keywords: phylogeneticsbioinformaticsEbolasequencingFASTANCBINIBLSEalgorithmsincubatorsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogram

    2063

    views

    5309

    downloads

    0

    comments

    0

    adaptations

    In-Class Workshops to Teach Introductory Biology Students about Undergraduate Research
    Decades of evidence support the premise that undergraduate research experiences are valuable endeavors for science students; however, a lack of knowledge about research and how to get involved can...

    Keywords: undergraduate research experiencesActive Learning WorkshopsResearch PreparationEquity in Research

    913

    views

    345

    downloads

    0

    comments

    0

    adaptations

    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.

    Keywords: spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions

    378

    views

    82

    downloads

    0

    comments

    0

    adaptations

    2020-Cline-EtAl-A Vision for Projects Across the Mathematics Curriculum
    We describe a model that incorporates projects at all stages across the undergraduate mathematics curriculum. Finally, we provide samples of projects that we have used in selected courses.

    Keywords: projectstechnical writinginterdisciplinary skills

    385

    views

    71

    downloads

    0

    comments

    0

    adaptations

    2018-Eduardo-Sontag-Lecture_Notes_on_Mathematical_Systems_Biology
    I am often asked if it is OK to use these notes in courses at other universities. The answer is “of course!” though I strongly suggest that a link to my website be provided, so that students can...

    Keywords: biologytextbooksystemsdyanmical system

    165

    views

    61

    downloads

    0

    comments

    0

    adaptations

    A class activity on classification
    Within the sciences, we are often talking of phylogenetic classification; hominin and non-human primate phylogenetic trees are often introduced in a course in biological anthropology. Students are...

    Keywords: hands-onphylogeny and classification

    421

    views

    80

    downloads

    0

    comments

    0

    adaptations

    Exploring Functions for Common Phage Proteins
    This resource is designed to help students better understand the functions of common structural and enzymatic phage proteins, and to relate these functions to phage structure using electron...
    1114

    views

    1801

    downloads

    0

    comments

    0

    adaptations

    Teaching introductory bioinformatics with Jupyter notebook-based active learning
    Presentation on teaching introductory bioinformatics with Jupyter notebook-based active learning at the 2019 Great Lakes Bioinformatics Conference

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

    1314

    views

    358

    downloads

    0

    comments

    0

    adaptations

    Agent-Based Modeling Course Materials
    Materials created for an upper level ABM course. Prerequisite: Students have taken either (a) another modeling course, or (b) the introductory computer science sequence.

    Keywords: agent-based modelingindividual-based modelingcourse materials

    1854

    views

    1946

    downloads

    0

    comments

    0

    adaptations

    MathBench: Evolved Immunity for Introductory Environmental Science
    The Evolved Immunity module was the focal module for this lesson. Evolved Immunity was chosen because this module includes content and quantitative elements from a range of lab and lecture topics...
    906

    views

    467

    downloads

    0

    comments

    0

    adaptations

    MCC - A National Malate Dehydrogenase Protein-Centric Molecular Life Sciences Couse-based Undergraduate Research Network (RCN-UBE Introduction)
    The MCC is an inclusive national community consisting of faculty, from community colleges, MSI, PUI and Research Intensive institutions teaching and developing Course based Undergraduate Research...

    Keywords: RCN-UBE Introduction

    241

    views

    67

    downloads

    0

    comments

    0

    adaptations

    TuNE-BIO - Transforming Assessment, Feedback, and Grading in Undergraduate Biology Education (RCN-Introduction)
    The aim of TUnE-BIO is to transform assessment, feedback, and grading practices in undergraduate biology classrooms to combat “weed-out” culture and decrease inequities. Our incubator year focused...

    Keywords: RCN-UBE Introduction

    398

    views

    76

    downloads

    0

    comments

    0

    adaptations

    CBEC - Cell Biology Education Consortium (RCN-UBE Introduction)
    The CBEC helps faculty at PUIs move cancer cell culture research into the classroom. The mechanism that provides faculty with the resources they need to do this are modular protocols called Cell...

    Keywords: RCN-UBE Introduction

    297

    views

    82

    downloads

    0

    comments

    0

    adaptations

    2017-Brandi-Garcia-Motivating engineering students to math classes - Practical experience teaching ODEs
    In this paper we propose an approach to teaching-learning process of mathematical concepts to engineering students with a motivational factor: a practical problem to be modeled in which students...

    Keywords: computational toolsteachingengineering studentspractical problem

    107

    views

    54

    downloads

    0

    comments

    0

    adaptations

    2016-Erno_Keszei-Chemical Kinetics for Beginners
    The most important goal of kinetic research is the identification and characterisation of elementary molecular events which make possible the transformation of reactants into products.

    Keywords: kineticszeroth order reactionfirst order reactionsecond order reactionreaction ratesthird order reaction

    109

    views

    60

    downloads

    0

    comments

    0

    adaptations

    2015-Sebesyen-Farago-Invasive Species Model with Linear Rat Harvesting on Easter Island
    In this paper we suggest a natural modification of this model. Namely, we will investigate the case where the amount of the rats is decreased due to some external factor, e.g., exterminations by...

    Keywords: carrying capacityharvestEaster Islandinvasie especiesratsRoughgarden theorem.

    126

    views

    60

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search