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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    A Case of Severe Insulin Resistance
    This case focuses on understanding how a mutation in a cell signalling protein (a kinase) can prevent insulin function and lead to diabetes.

    Keywords: molecular visualization and analysisPDBMolecular Case Studyinsulin resistance

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    Vertebrate Clade Race
    This activity introduces basic tree reading skills for evolutionary phylogenies. It is designed as a short group activity. After completing this activity, students should be familiar with basic...

    Keywords: phylogeneticsevolutionary biologytree readingvertebrates

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    The Effect of Climate Change on Butterfly Phenology - Intro Environmental Science
    In this module, students practice interpreting the relationship between variables before exploring changes in butterfly phenology through the use of natural history collections data.

    Keywords: ExcelResources @ ESA - TIEEgraphingquantitative literacyclimate changefmnphenologynatural history collectionsDIGbutterflyinterspecific interactions

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    Natural History Collections as Emerging Resources for Innovative Education
    Natural history collections have the potential to help transform undergraduate science education from passive learning into an active exploration of the natural world.

    Keywords: educationnatural historycollectionsdigital resourcesResources @ QUBES - Teaching & Reference

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    Leaf cutter ant foraging
    This module introduces students to leaf-cutter ants in the rainforests of Panama. Students derive their own research hypotheses regarding ant foraging or allometric scaling relationships.

    Keywords: leaf cutter antsforagingallometrylinear regressiongraphingdata visualizationResources @ AIMSbody size

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    Climate Change
    This video describes the basic science of climate change. How do we know about climate in the past? What are humans interfering with? How can we make predictions about what will happen in the future?

    Keywords: videosclimate changeScience Forward

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    A CURE for Salmonella: A Laboratory Course in Pathogen Microbiology and Genomics
    Rapid advances in genomics and bioinformatics, the vast amount of data generated by next-generation sequencing, and the penetration of the ‘-omics’ into many areas of biology have created a need...

    Keywords: epidemiologyresearchbioinformaticsgenomicspublic healthAntibiotic Resistant BacteriaSalmonellaDNA sequencingpathogenic bacteria

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    Interpreting the Pseudocot Phylogeny
    Students use physical characteristics, genetics, and a fossil record of hypothetical flowering plants to develop fundamental phylogenetic tree-building skills.
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    Restoring Tropical Forests: Implementing an online module in an undergraduate biology course in Indonesia
    This resource describes my implementation of a module on tropical forest restoration in Costa Rica for an undergraduate Ecology course at Universitas Gadjah Mada, Indonesia....

    Keywords: RestorationEcosystem Servicesforest restorationtransdisciplinary researchsocial forestryhuman well-beingcommunity-based

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    UNIDE - The Undergraduate Network for Increasing Diversity of Ecologists (RCN-UBE Introduction)
    We aim to build a sustainable network of ecologists, educators, social scientists, and students who are committed to identifying and remedying cultural and social barriers that reduce human...

    Keywords: RCN-UBE Introduction

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    Responses to Climate Change in California Chipmunks: Move, Adapt, or Die
    A series of three modules using data from natural history museum collections to examine responses to climate change in multiple chipmunk species. Elevation and morphological data, beginner skills...

    Keywords: statisticsmodelingmodulemorphologysummary statisticsmodulesclimate datamuseumsclimate changeundergraduate educationR programming languageprogrammingelevationnatural history museumsmammalssmall mammals community dynamicsmuseum collectionsVertebrate Morphologyopen educational resourceR programming environment

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    QUBES: Building a community to promote undergraduate quantitative biology education
    This was a poster session at the 2015 Ecological Society of America meeting in Baltimore, MD.

    Keywords: Ecological Society of America

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    Agents of change: Determining effects of pollution on marine environments through data interpretation
    In this lesson, students discuss the effects of disturbance in marine environments with a focus on pollution. They also evaluate the anthropogenic causes and consequences of pollution on a variety...

    Keywords: fishgraph interpretationfmnmarine ecosystemsmarine ecologymicroplastic pollutionEcological Disturbanceintermediate disturbance hypothesisstudent STEM identitypollutionBioGraphIrepresentation in STEMoil spill

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    Restoring Tropical Forests: Implementing a module in an undergraduate majors’ course in forest ecology in Costa Rica
    This publication describes implementation of a module on tropical forest restoration in Costa Rica for an upper-level undergraduate course in forest ecology at the Instituto Tecnológico de Costa...

    Keywords: forest ecologyRestorationfield course

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    2013-Greer-EtAl-Collaborative Understanding of Cyanobacteria in Lake Ecosystems
    We describe here a collaboration in which the mathematicians help collect data, the ecologists synthesize more data from model output than they can produce empirically, and the collaboration...

    Keywords: collaborationlakeecosystemcyanobacteriafield workcolonyGloeo

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    MathBench: Biodiversity Assessment of Stream Biota
    The MathBench module, "The Case of the Missing Mountaintop" introduces students to the concept of biodiversity and measures used to quantify biodiversity and stream health. Students investigate the...

    Keywords: ecology labCommunity Ecologyenvironmental scienceconservation ecologyStream ecology

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    Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE
    We introduce TRACE, a framework for documenting model testing and analysis. TRACE is based on the recently proposed framework of model "evaluation" , and is designed to make models fit for...

    Keywords: standardizationgood modelling practicerisk assessmentdecision supportTRACEResources @ QUBES - Teaching & Reference

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    Diseasebots
    This module explores the effects of host density on contact rates and transmission of pathogens or mutualist symbionts using a hands-on simulation, a computer agent-based model in NetLogo, and an...

    Keywords: NetLogoDisease ecologydensity dependenceSpreadsheethost-parasitemutualismOpen-inquiry group projectsmanipulative models (‘beanbag biology’)plotting

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    Asking and Answering Questions: ADW’s Flexible Querying Tool
    Presentation made by Tanya Dewey et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America...

    Keywords: Ecological Society of America

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    Squirrels in Space: Using Radio Telemetry to Explore the Space Use and Movement of Sciurid Rodents
    Biotelemetry is used by researchers to track the interactions of animals with each other and the environment. While advancing technology has led to the development of numerous biotelemetry tools,...

    Keywords: DispersalHabitat selectionHome rangeSquirrel-Net

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