You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    A CURE for Salmonella: A Laboratory Course in Pathogen Microbiology and Genomics
    Rapid advances in genomics and bioinformatics, the vast amount of data generated by next-generation sequencing, and the penetration of the ‘-omics’ into many areas of biology have created a need...

    Keywords: epidemiologyresearchbioinformaticsgenomicspublic healthAntibiotic Resistant BacteriaSalmonellaDNA sequencingpathogenic bacteria

    5811

    views

    1133

    downloads

    0

    comments

    0

    adaptations

    Using Zebrafish in a Developmental Biology Lab Course to Explore Interactions Between Development and the Environment
    Important learning outcomes for biology students include the ability to develop experiments as well as pull together concepts across their coursework. The field of developmental biology, especially...

    Keywords: toxicologymorphogenesisorganogenesis

    2341

    views

    682

    downloads

    0

    comments

    0

    adaptations

    Training future faculty in 30 minutes a week: A modular framework to provide just-in-time professional development to graduate teaching assistants
    Despite increasing recognition of the need to train the teaching assistants (TAs) teaching the majority of STEM lab sections, very few programs report offering sustained teaching professional...

    Keywords: professional developmentTA TrainingTeaching Assistants

    1284

    views

    198

    downloads

    0

    comments

    0

    adaptations

    Students Authoring Molecular Case Studies
    Poster on using case studies to help students develop their skills in reading primary literature and identifying authentic scientific problems by authoring their own case studies. Presented at the...

    Keywords: case studiesProtein StructureProtein Data BankMolecular Case Study2021 BIOME

    1176

    views

    352

    downloads

    0

    comments

    0

    adaptations

    HITS: A network to create inquiry-based case studies that make high-throughput approaches and discovery accessible
    HITS brings together interdisciplinary groups of HT researchers and instructors to produce authentic HT case studies that can be implemented in a variety of courses, allowing students to analyze...

    Keywords: case studieshigh-throughputHITS

    3072

    views

    636

    downloads

    0

    comments

    0

    adaptations

    HITS: A Network to Create Inquiry-based Case Studies | BIOME 2022
    We created the NSF-funded High-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students (HITS) Research Coordination Network to address this gap. HITS brings together...

    Keywords: case studiesHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s StudentsHigh-throughput (HT) approaches

    506

    views

    94

    downloads

    0

    comments

    0

    adaptations

    Where Does Elsie's Hair Color Come From? A "De-Simplified" Pedigree Lesson
    Pedigree analysis is part of most Genetics curricula, but the examples traditionally used in genetics courses present phenotypes as if they were entirely and inexorably defined by genotype. This...

    Keywords: pedigreeMultifactorialphenotypic variationpenetranceexpressivityquantitative variation

    1165

    views

    318

    downloads

    0

    comments

    0

    adaptations

    Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
    Next-generation sequencing is radically changing the study of biology, but there are currently few resources aimed at teaching the required laboratory and data-analysis skills to undergraduate...

    Keywords: statisticsbioinformaticsRNAseqgene expressioncomputer programming

    3355

    views

    559

    downloads

    0

    comments

    0

    adaptations

    Using genomic data and machine learning to predict antibiotic resistance: a tutorial paper
    Antibiotic resistance is a global public health concern. Bacteria have evolved resistance to most antibiotics, which means that for any given bacterial infection, the bacteria may be resistant to...

    Keywords: Tutorialmachine learningantibiotic-resistanceArtificial Intelligence

    271

    views

    101

    downloads

    0

    comments

    0

    adaptations

    Module 1: Introduction to the Genome Browser: What is a Gene?
    This lesson introduces the University of California Santa Cruz genome browser to students, walking them through some of the key features so that it can be used for analysis of gene structure.

    Keywords: geneticsbioinformaticsGenome BrowserSimilarity searchesExonsIntronsEvidence TrackStart CodonStop Codon

    1227

    views

    2007

    downloads

    0

    comments

    0

    adaptations

    Lesson V - Phylogenetics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

    1600

    views

    2171

    downloads

    0

    comments

    2

    adaptations

    Behavioral Genetics: Investigating the genes of a complex phenotype in fruit flies
    Introductory genetics laboratory published as GSA Learning Resource

    Keywords: behaviorbioinformaticsNIBLSEdrosophilagenetic basisfruit fliesmodel organism

    1535

    views

    356

    downloads

    0

    comments

    0

    adaptations

    HITS: A network to create inquiry-based case studies that make high-throughput approaches and discovery accessible
    Poster on the work of the NSF-funded High-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students (HITS) Research Coordination Network. Presented at the 2021 BIOME Institute.

    Keywords: case studieshigh-throughputHITSHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students2021 BIOME

    909

    views

    265

    downloads

    0

    comments

    0

    adaptations

    iEMBER - Novel Networking Fostering Interdisciplinary Communities and New Research Collaborations (RCN-UBE Introduction)
    The vision of the inclusive Environments and Metrics in Biology Education and Research (iEMBER) Network is to improve biology education for learners that are often traditionally excluded from the...

    Keywords: RCN-UBE Introduction

    237

    views

    55

    downloads

    0

    comments

    0

    adaptations

    A Classroom Intervention to Reduce Confirmation Bias
    STEM students are often unable to recognize cognitive bias in their own disciplines, and simply describing cognitive bias to students has shown to be insufficient to improve critical thinking....

    Keywords: biasprocess of sciencemetacognitionConfirmation BiasCognitive Bias

    3662

    views

    401

    downloads

    0

    comments

    0

    adaptations

    Engaging Students in Pharmacogenetics: Patient Case Studies Using the PharmGKB Website
    Cytochrome P450 (CYP) enzymes are important regulators of drug efficacy and toxicity. Genetic variation in CYP isoforms can impact how well patients respond to medications or experience unwanted...

    Keywords: toxicologyPharmacologydrug metabolismpharmacodynamicspharmacogenetics

    1635

    views

    294

    downloads

    0

    comments

    0

    adaptations

    1969-Israelsson-Johnsson-Phase-shift in Geotropic Oscillations a Theoretical and Experimental Study
    The paper studies geotropical induced phase-shifts in circumnutations (turning) of Helianthus annus hypocotlys.

    Keywords: plantoscillationdelaycircumnutationturning

    139

    views

    36

    downloads

    0

    comments

    0

    adaptations

    Ecology/Environmental Biology Molecular Case Studies for Molecular CaseNet - YouTube
    Biome Institute 2021, Fall Working Group Summary Video

    Keywords: climate changebiofilmcoffeecoral bleachingMolecular structuremolecular visualizationMolecular Case Studycholera

    946

    views

    279

    downloads

    0

    comments

    0

    adaptations

    Getting students to reason with data: QUBES tools and teaching resources built for introductory biology
    Workshop presented at the 2019 Biology Learning Community Conference

    Keywords: QUBESdataintroductory biologydata in the classroomQuantitative reasoning

    1308

    views

    64

    downloads

    0

    comments

    0

    adaptations

    Learning about Protein Structure and Function with Molecular CaseNet
    Poster on the case studies available through Molecular CaseNet that focus on protein structure and function. Presented at the 2021 BIOME Institute.

    Keywords: case studiesmolecular biologyProtein Structureprotein function2021 BIOME

    854

    views

    219

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search