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    Evaluating the potential for immune escape: how likely is an antibody to protect against a specific SARS-CoV-2 variant?
    Commercial antibodies to the SARS-CoV-2 spike protein have been successfully used to treat people with COVID-19. Unfortunately, as the SARS-CoV-2 virus evolves, new variants have appeared that can...

    Keywords: course based undergraduate research experiencesBLASTmolecular modelingSARS-CoV-2antibodyNextstrainiCn3DSequence alignmentStructure alignment

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    Designing a High Quality and Accessible Scientific Poster
    The aim of this project is to help undergraduates understand the importance of making their research accessible to a wide audience and to practice this idea by deliberately designing a scientific...

    Keywords: Accessibilityscientific poster

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    Geography and Embodied Perceptions: a pathway to reanimating rivers through lived experiences.
    In this lesson students embark upon a journey through the many ways we come to know a watershed, with foci on its physical geography and our embodied perceptions. This enables students to formulate...

    Keywords: PhilosophygeographyRiver Field Studies Networkperceptionwatershednature journalexperiencesensationhumanityplacehomeembodied perceptionsense of placeplace attachmenttransdisciplinaryqualitative methodscalable

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    Parasite Patrol: Lifecycle Game
    Parasite Patrol is a detective-style game about parasite lifecycles suitable for use in university or K-12 settings. The goal of the game is for participants to role-play parasite detectives who...

    Keywords: parasitesGamelife cycleBoard game

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    2015-European_Bioinformatics_Institute-Bio-Models-Database
    Bio Models Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references. All models are...

    Keywords: biologydatabasebioinformaticsModelscomputational models

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    2013-Brian_Winkel-Reflecting_On_Walls
    We reflect on our passion for teaching mathematics, useful mathematics, by considering our understandings of just what a wall is and what a wall means to us.

    Keywords: mathematicsmathematical modellearningcell wall

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    Data management and introduction to QGIS and RStudio for spatial analysis
    Students learn about the importance of good data management and begin to explore QGIS and RStudio for spatial analysis purposes. Students will explore National Land Cover Database raster data and...

    Keywords: tool:rstudioGISdata managementlandscape ecologyGeospatial ScienceNational Ecological Observatory Networkquantitative inquiryQGIS

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    Training future faculty in 30 minutes a week: A modular framework to provide just-in-time professional development to graduate teaching assistants
    Despite increasing recognition of the need to train the teaching assistants (TAs) teaching the majority of STEM lab sections, very few programs report offering sustained teaching professional...

    Keywords: professional developmentTA TrainingTeaching Assistants

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    Teaching about fatherless snakes in a prison classroom
    Developing a course for the first time as a graduate student is challenging. When I first taught introductory biology with the Cornell Prison Education Program, I struggled to design and adapt...

    Keywords: meiosismitosisReproduction

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    A Quick Guide to Teaching R Programming to Computational Biology Students
    An introduction from an experienced educator in teaching R to computational biology graduate students.

    Keywords: Rcomputational biology

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    Casting a Wide Net via Case Studies: Educating across the undergraduate to medical school continuum in the biological sciences
    This article seeks to help bridge undergraduate and medical educators by describing shared educational goals and strategies, highlighting resources relevant for both groups, and exemplifying shared...

    Keywords: genetic testingdirect-to-consumer genetic testinginformed consentprenatal screeningsecondary findingswhole genome sequencing

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    Ecological Forecasting Student Resource: Overview of Forecasting, Potential Careers, Helpful Courses
    Are you an undergraduate or graduate student interested in learning more about ecological forecasting? Or do you work with students that are exploring career options? This is short resource...
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    The BioTAP Professional Development Model: Expanding Empirical Research on Graduate Student Teaching Professional Development
    The Biology Teaching Assistant Project (BioTAP) provides a year-long mentoring program for practitioners and researchers of Biology Graduate Teaching Assistant Teaching Professional Development...

    Keywords: mentoringstemcommunityUndergraduateteaching professional developmentGraduate Teaching AssistantConfidence in Research Skills

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    A CURE-based approach to teaching genomics using mitochondrial genomes
    There is an abundance (currently over 1016 DNA bases) of publicly available genetic sequence data and a dearth of trained genomicists to process and interpret it, necessitating more trained...

    Keywords: proteinsMitochondrial GenomesNuclear GenomesrRNAtRNA

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    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

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    2012-Brian_Ingalls-Mathematical Modelling in Systems Biology An Introduction
    This is a comprehensive text with much biology background to motivate the mathematical modeling, exercises and answers, and many rich examples.

    Keywords: spatialsensitivity analysisgene regulatory networksstochasticbifurcationmetabolic networkselectrophysiologytransductionrate lawsbiochemical reactions

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    Fantastic Birds and Where to Find Them
    5E lesson plan for middle/high school aligned to NGSS standards.

    Keywords: conservationspecies interactionsidigbionatural historyBiodiversityendangered species

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    Marriage age model ODD
    Supplemental resource from ABM

    Keywords: case studytextbookNetLogoagent-based modelingIndividual & Agent Based ModelingODD protocol

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    Pokemon Go and Ecology
    These are resources associated with using Pokemon Go to teach concepts in Ecology.

    Keywords: Pokemon Go

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    1991-Carmine_Chicone-Ordinary Differential Equations with Applications
    This is a complete text for a graduate level course. Hence there is much theory, but there is a chapter on applications with some sophisticated approaches and high level modeling of motion.

    Keywords: orbitstwo mass systematommagnetic fieldcoupled penduluminverted pendulumcharged particleKepler motion

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